Lactobacillus panisapium: GYM71_07950
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Entry
GYM71_07950 CDS
T07602
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lpai
Lactobacillus panisapium
Pathway
lpai03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lpai00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GYM71_07950 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpai03021
]
GYM71_07950 (rpoC)
03400 DNA repair and recombination proteins [BR:
lpai03400
]
GYM71_07950 (rpoC)
Enzymes [BR:
lpai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GYM71_07950 (rpoC)
Transcription machinery [BR:
lpai03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GYM71_07950 (rpoC)
DNA repair and recombination proteins [BR:
lpai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GYM71_07950 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
CCDC-167
Motif
Other DBs
NCBI-ProteinID:
QYN53357
UniProt:
A0ABX8WC40
LinkDB
All DBs
Position
complement(1669068..1672733)
Genome browser
AA seq
1221 aa
AA seq
DB search
MIDVNKFESMQIGLASPNKIRSWSYGEVKKPETINYRTLKPEKDGLFDERIFGPTKDWAC
ACGKYKGVRYRGIVCDRCGVEVTSSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLILDM
SPRLLEEVIYFAAYIVIDPGDTDLEFKQLLTEAEYREQKAKFGSRFEAKMGAEAIRDLLR
KVDLEKEVKDLKKELETATGQKRTRAIRRLDILDAFKDSGNKPEWMVIDAVPVIPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPNIIVQNEKRMLQEAVDALIDNGR
RGRSVVGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVSPKLKFYQCGVPRP
MALELFKPFVMHELVKRKIASNIKSAKRKIDREDDDVWDVLEDVIKERTVLLNRAPTLHR
LSIQAFEPVLVPGKSIRLHPLACEAYNADFDGDQMAIHVPLSDEAVAESRLLMLAAHHIL
APKDGKPIVTPSQDIVLGNYWLTQAEKGREGEGMIFNSPDEATVAYNNGDIHYHSIIGMS
ADSMPKKAWPKGYEHGIFITTYGRVIFNQIFPEDYFYVNEPTEENLNNPLAAKYFLEPGE
DIHEKIDNVAGDLIATPFKKSFLSDSIATIYKYYKVQRTSEYLDDLKTLGYTSSTTSGIT
IGMTDVPEIDDKDEKVAKAHKQVDVVSKQFRRGLITEQERHDRVISIWNECKDQVQNEIA
QIYDPRNPITIMADSGARGNISNFTQLAGMRGLMATPNGGLFEIPVTSNFKEGLSVLELF
MSTHGARKGMTDTALKTAQSGYLTRRLVDVAQDVIIREDDCGTDRGINVHSIMEGDELIE
PLYDRLLGRFTAETVKDPQTGEAIVGPNVMLDENLSHKICDAGVTDVKIRSILTCDTPHG
VCRKCYGMNLATGEEVEVGEAVGTVAAQSIGEPGTQLTLRTFHNGGVAGAEDITQGLPRV
QELFEARNPKGRAVISEVDGVIDSIQENPAEHTREITVKGKIDTRSYSVPYTASVAVSEG
DEVRRGNKLTLGSIDPKELIQVTDTLTTEEYILVEVQKAYRMQGVDISDKHVEVLTRQML
QKVRVLDPGETNLLPGEIMDIGEFKERNTSVIISGGIPATAQSVILGITKAALETNSFLS
AASFQETTRVLTDASIRGKNDPLLGLKENVIIGKIIPAGTGLPIYRDMEPEADVKKPKSV
YSIADIEKKMKEADQAGEPQG
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgacgtaaataaatttgaaagcatgcaaattggtcttgcttcgccaaacaaaatt
cggagctggtcgtatggtgaagttaagaagccagaaacgattaactaccgtactttaaag
ccagaaaaggatggtctgtttgacgaaagaatctttggaccaaccaaggattgggcctgt
gcatgtggcaaatacaagggtgtaagataccgcggaatcgtttgtgatcgctgtggggtt
gaagttacttcctctaaagttagacgggaacggatgggtcacattgagttggccgctcca
gttactcatatttggtactttaagggtattccatcacggatgggattaattcttgatatg
tcaccaagattgctggaagaagttatctactttgcagcatatatcgtgattgatccaggc
gatacagaccttgaatttaaacaattgctgacggaagctgaataccgtgagcaaaaagct
aagtttggtagtcgctttgaagccaaaatgggtgccgaagcaatccgtgacttattgcgc
aaggttgaccttgaaaaagaagttaaagatttaaagaaagaattggaaactgctacaggt
caaaaacggactcgtgcaatcagaagattagatatcttggatgcgtttaaagattctggc
aataagcctgaatggatggtgattgacgctgtcccagtcatcccaccagacttgcgtcca
atggtacaacttgaaggtggccgttttgccacttcagacttaaacgacttgtaccgtcgg
gttattaaccgtaataaccgtttgaagagattacttgacctgaatgcaccaaacattatc
gttcaaaacgaaaagcggatgttgcaagaagcagtcgacgctttaattgataacggtcgt
cgtggtcgttcagttgttgggcctggtaaccgtccacttaagtcactttcacacatgctt
aagggtaagcaaggacgtttccgtcaaaacttgcttggtaagcgtgttgactactctggt
cgttcagttatcgatgtttcaccaaaattgaagttctatcaatgtggtgttcctcgtcca
atggcactagaattattcaagccatttgttatgcatgaattggttaaacgcaagattgct
tctaacattaagagcgctaagcgtaagattgatcgtgaagacgatgatgtctgggatgta
cttgaagatgtaattaaggaaagaacggttttactaaaccgtgcgccaacattacaccgt
ttgagtatccaagcctttgaaccagttttagttcctggtaaatcaattcgtttgcaccca
cttgcctgtgaagcttacaacgctgacttcgatggtgaccagatggccattcacgtacct
ttgtcagatgaagctgttgcagaatcacgcttgttaatgcttgcagctcatcatattctt
gctccaaaagatggtaagccaatcgttactccttctcaggatatcgttttaggtaactac
tggttgactcaagctgaaaagggtcgtgaaggtgaaggaatgatctttaattcacctgac
gaagcaactgttgcatacaataatggtgatattcattatcactcaattattggaatgtct
gcggactcaatgccaaagaaggcatggcctaaaggttatgaacacggcattttcattact
acctatggtcgtgtgattttcaaccaaatcttcccagaagattacttctacgttaacgag
ccaactgaagagaacctgaataatccactagctgctaagtacttcttagagccaggtgag
gatattcatgaaaaaattgataatgttgctggtgatttaattgctacgccatttaagaaa
tcattcttatctgactcaattgccacaatttacaagtactacaaggttcaaagaacttca
gaataccttgatgacttgaagacacttggttacacaagttcaactacttctggtattaca
atcggaatgaccgatgttccagaaattgatgacaaggatgaaaaggtagctaaggcccac
aagcaagttgacgtcgtttctaagcagtttagacgtggtttaattactgagcaagaacgt
cacgatcgagtaattagtatttggaatgagtgtaaggaccaggttcaaaatgagattgca
cagatctatgatccacgtaatcctattacaatcatggctgactccggtgctcgtggtaat
atttctaactttactcagcttgccggaatgcgtggtttgatggccactcctaacggtggt
ttgttcgaaattccagttacttcaaacttcaaggaaggtttgtcagttctagaattattc
atgtccactcacggtgcacgtaagggaatgactgatacggccttgaagactgctcagtca
ggttacttaactcgtcgtttggttgatgttgctcaagatgttattatccgtgaagatgac
tgtggcactgatcgtggtatcaatgttcactcaatcatggaaggtgacgaattaattgag
ccattatacgatcgtttacttggtcggttcactgctgaaactgttaaggatccacaaacc
ggtgaggcgatcgttggaccaaatgtaatgcttgatgaaaatctgtcacataaaatttgt
gatgccggtgttacagacgtgaagattcggtcaattttaacttgtgatacccctcacggt
gtctgccgtaaatgttatggtatgaacctggctacgggtgaagaagttgaagttggtgaa
gcagttggtactgttgccgctcaatcaattggtgaacctggtacgcagcttactttacgt
actttccacaacggtggtgttgccggtgctgaagatattactcagggtcttcctcgtgtg
caagaattgtttgaagctcgtaaccctaagggtcgtgctgttatttctgaagttgatggt
gttattgactcaattcaagaaaacccagcagagcacacacgtgaaattactgttaagggt
aagatcgatactagaagctacagtgttccttatactgcttcagttgcagtcagtgaaggt
gatgaagttcgccgtggtaacaagttgactcttggttcaatcgatcctaaggaattaatt
caagtaactgatacgttgacaaccgaagaatacatcttggttgaagtacaaaaggcttac
cggatgcagggtgttgacatttcagataagcacgttgaggtcttaactagacaaatgttg
caaaaagttcgtgttcttgatcctggtgagactaacttgcttccaggtgaaatcatggat
attggcgaattcaaggaacgcaacacttcagtaattatttcaggtggaatccctgcaact
gctcaaagtgtaattcttggtattactaaggctgcccttgaaactaatagtttcttgtca
gctgcttcattccaggaaactactcgtgtgctgactgatgcttcaatcagaggcaagaac
gatccacttcttggtttgaaagaaaatgttatcatcggtaagattattccagccggtact
ggtcttccaatttaccgtgatatggaacctgaagctgatgtgaagaagcctaagtctgtc
tactcaatagctgatattgagaaaaagatgaaggaagctgatcaagctggggaaccacaa
ggataa
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integrated database retrieval system
