Lysinibacillus pakistanensis: GDS87_00220
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Entry
GDS87_00220 CDS
T06280
Symbol
dnaX
Name
(GenBank) DNA polymerase III subunit gamma/tau
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
lpak
Lysinibacillus pakistanensis
Pathway
lpak03030
DNA replication
lpak03430
Mismatch repair
lpak03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lpak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GDS87_00220 (dnaX)
03430 Mismatch repair
GDS87_00220 (dnaX)
03440 Homologous recombination
GDS87_00220 (dnaX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lpak03032
]
GDS87_00220 (dnaX)
03400 DNA repair and recombination proteins [BR:
lpak03400
]
GDS87_00220 (dnaX)
Enzymes [BR:
lpak01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GDS87_00220 (dnaX)
DNA replication proteins [BR:
lpak03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GDS87_00220 (dnaX)
DNA repair and recombination proteins [BR:
lpak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GDS87_00220 (dnaX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
AAA
DNAX_ATPase_lid
DNA_pol3_gamma3
RuvB_N
AAA_22
AAA_5
AAA_30
AAA_14
AAA_16
AAA_19
Mg_chelatase
AAA_7
Rad17
TIP49
AAA_24
DnaX_C
AAA_assoc_2
PIF1
DNA_pol3_delta_C
TsaE
nSTAND3
RNA_helicase
AAA_18
Motif
Other DBs
NCBI-ProteinID:
QGG49476
LinkDB
All DBs
Position
49304..51091
Genome browser
AA seq
595 aa
AA seq
DB search
MTYQAFYRVYRPQSFREMSGQAHVKRTLQNALLANKTTHAYLFSGPRGTGKTSTAKIFAK
ALNCERAPSNEPCNECATCISITDGSHPDVIEFDAASNSRVEEIRDIIEKVRFAPASSRY
KVYIIDEVHMLSTSAFNALLKTLEEPPPHAVFILATTEPHKLPATIISRCQRFDFKRLST
NDIIERMKVVLEDIELPYEEQGLKVIAQSAAGGMRDALSLLDQVVSFSGEKLKLEDTLLV
TGSISQEVFYDLAEALKVKDVAKMLALLEQLIADGKDPLRLSEDLITFFRDLLLLQTSDE
LTELLELVSPEERVFTLAHDFAPDLLYGYIDILAKTQQEMRFSHHTKIYLETALLKMVQF
SGGLVSQTTSTVEAALSPELAQKIVALEQTVQQLSAQLQAGAPVQQMQAPKEQRPRAKSP
NGYKAPTGRIQEVLKDATKQDVHRIKSVWAQALNQMQKSQSALLAEAEPVAASSSAFVLK
FKYDIHCQMVADNQSLKAQFTQLIAGQTGTMYEMLCTPEETWLKLREEFIRDHGLQQQKK
SQTVSEQEMELLEPPPAEMPDEPFIDDAQPLASQDPLVTEAEKLFGKDFIEIVED
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
ttgacgtatcaagcattttatcgtgtgtatcgaccgcaatcatttcgagaaatgtctggt
caagcacatgtcaaaagaacgctacaaaatgctctcctagcaaacaaaaccacacatgct
tatttgttttctggcccaagaggaacggggaaaacaagtacagctaagatttttgcaaaa
gctttaaattgtgagcgagcaccatccaacgagccatgtaacgaatgtgccacttgtata
agcattacagatgggtcgcaccctgatgtgattgaatttgatgcagcatctaattctaga
gttgaagaaatacgtgatattatcgagaaagttcgctttgctcctgctagtagtagatat
aaagtgtatattatcgatgaagtgcatatgctttctacaagtgcttttaatgcactttta
aaaacattagaagaaccacctccacatgctgtttttattttggcgacaacagagcctcat
aaattgcctgcaaccattatctcacgttgccaacgctttgatttcaaacgactatcaact
aacgatattatcgaacgcatgaaggttgtattagaggacattgagctaccgtatgaggaa
caaggtttgaaggtaattgcacaatctgctgctggcggtatgcgtgatgcattgagttta
ttagatcaggttgtctcctttagtggagagaagctaaagcttgaggatacattacttgta
acaggttcgattagtcaggaagttttttatgacttagcagaagccttaaaagtaaaagat
gttgctaaaatgcttgctttattagaacagcttatcgcagatggcaaggatccacttcgt
ctttcagaggacttgattacatttttccgtgacttattattgctacaaacaagtgatgaa
ttgaccgaactattagagctagtttcgccggaagaacgtgtatttacattagcacatgat
tttgcaccagacttgctatacggctacatagatattttagcgaaaacacagcaagaaatg
cgattctcccatcatacaaaaatctatttagaaacagcattacttaaaatggtacagttt
tcgggaggactagttagtcaaacaacttctacagttgaagcagcattgagcccagagcta
gctcaaaaaatagttgcacttgagcaaacggtgcaacaattgtcagcacaactacaggca
ggagctcctgtgcagcagatgcaagcacctaaagaacaacgaccacgagctaaaagtcca
aatggctacaaagcaccgacagggcggattcaagaggtgctaaaagatgcaacgaaacag
gatgttcatcggattaaatcagtttgggcccaagcgttaaaccaaatgcaaaagtcacaa
tctgctcttttagcagaagctgaacctgttgcagcatcttcaagtgcttttgtgttaaaa
ttcaagtatgatattcattgtcaaatggttgctgataaccaatctctaaaagctcaattc
acacaattaattgctgggcaaactggtacaatgtatgaaatgctttgtacccctgaagaa
acgtggttaaaattacgtgaagagtttattcgtgatcatggtttgcaacagcagaaaaaa
tctcagacagtgtccgagcaggagatggaattactagagccaccaccggcagaaatgcct
gatgagccgtttatcgatgatgctcagccacttgcctcacaggatccacttgtgacagag
gcggaaaagttgtttggtaaagattttatagaaattgtggaagattaa
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