Lysinibacillus pakistanensis: GDS87_00295
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Entry
GDS87_00295 CDS
T06280
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
lpak
Lysinibacillus pakistanensis
Pathway
lpak03030
DNA replication
lpak03430
Mismatch repair
lpak03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lpak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GDS87_00295 (holB)
03430 Mismatch repair
GDS87_00295 (holB)
03440 Homologous recombination
GDS87_00295 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lpak03032
]
GDS87_00295 (holB)
03400 DNA repair and recombination proteins [BR:
lpak03400
]
GDS87_00295 (holB)
Enzymes [BR:
lpak01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GDS87_00295 (holB)
DNA replication proteins [BR:
lpak03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GDS87_00295 (holB)
DNA repair and recombination proteins [BR:
lpak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GDS87_00295 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNApol3-delta_C
AAA
AMPKBI
Motif
Other DBs
NCBI-ProteinID:
QGG49488
UniProt:
A0ABX6D3W9
LinkDB
All DBs
Position
63293..64297
Genome browser
AA seq
334 aa
AA seq
DB search
MAKNVEELFSLQPVVMKQLQTIFDKNRLAHAYIFDGEKGTGKVDIMRFFVKLMLCEQPNL
NVPCETCRNCRRVDSGNHPNIHQIYPDGQFIKIDQIRDLVAEMKMMGVEEGRKIYVLHHA
DRLNIASANMILKFLEEPDGEVTAILLTEQMQSILPTIRSRCQHIKFQKMPRHVLLNHLQ
ESNISYSMSCTVSMMTNELETAIFLANDEQFALARKTVLKLVEVIRQNVHEAMLVVHEEW
LPLFKEKSEMEQALDLLLFAYRDIVSIKANPEAACTYPDMLQTFKEAALHSTYERLSSQM
ESILQARASLQRNMNRTLLMEQLMLNLQEGYTFV
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atggccaagaatgttgaagagctattttcactacaacctgtcgtaatgaagcagcttcaa
acgatttttgacaaaaatagattagcacatgcatacatttttgatggcgaaaaagggaca
ggcaaagtagatattatgcggttttttgtcaaattaatgctatgtgagcaaccaaatcta
aatgttccatgtgaaacatgtcgaaattgcagacgtgttgattctggcaatcatcctaat
attcatcaaatatatccagatggtcaatttattaaaattgatcaaatacgtgatttagta
gctgagatgaagatgatgggtgttgaagaagggcgaaagatttatgtacttcatcatgca
gatcgacttaatattgcatccgcaaatatgattctaaaatttttagaagaacctgatgga
gaggttactgccattttgctaactgagcaaatgcagtcaatattaccaacgattcgctct
agatgtcagcatataaagtttcaaaaaatgcctcgtcatgtattgttaaatcatttgcaa
gaaagcaatatttcttattcaatgtcttgtacagtgagcatgatgacgaatgagctcgaa
acagcaatatttttagcaaatgacgagcagtttgcacttgctcgaaaaacagtgttaaaa
ttagtagaggtaattcgccaaaatgtacacgaagcaatgctagttgtgcatgaagaatgg
ttgccactttttaaagaaaaaagtgaaatggaacaagcattggatttactactatttgct
taccgtgatatagtgtcaataaaagctaatcccgaggcagcttgtacttatccagacatg
ttacagacatttaaagaagctgcgttacattcgacttatgaacgcctatctagtcaaatg
gagtctattttacaggcgcgcgcatctttacagcgtaacatgaataggacgttattgatg
gagcagctaatgctaaatctgcaggagggatacacatttgtataa
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