Lysinibacillus pakistanensis: GDS87_03640
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Entry
GDS87_03640 CDS
T06280
Symbol
addB
Name
(GenBank) helicase-exonuclease AddAB subunit AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
lpak
Lysinibacillus pakistanensis
Brite
KEGG Orthology (KO) [BR:
lpak00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lpak03400
]
GDS87_03640 (addB)
Enzymes [BR:
lpak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GDS87_03640 (addB)
DNA repair and recombination proteins [BR:
lpak03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
GDS87_03640 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
QGG50089
LinkDB
All DBs
Position
818123..821632
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AA seq
1169 aa
AA seq
DB search
MTLRIVSGRSGTGKSTFIHQEIVEQLKSEPLGHPIFVIVPDQMSYSTEYELTNKHGLQGL
IRAQVMTFKRLAWLVLQETGGIARKEVNGYGYRMLIRKLLEEQKDEFSLFRQAAGKRGFT
EEIETLLREFSRYSVNSSVLAEVTASLKAVEAPHTLQAKTNDLQVVLQALEARLGTTYVD
SEGYYPILTEHLKDSETMKQATIYIDGFTAFTVRELELVKELLKVTKQVTVVLPFDHIDE
AYDEQSLFHEAALTNKRLHDIANEEGIEVDAPLHFYYTYRFQSKDLQHVEEEFSKLVPQS
IETSGDVKVLEASNRRAEIHAIAREITKLTKEDGYRYQDIVLLYRQAEVYDPLISTIFQQ
YEIPTFTNSKKTMLHHPLIELSRSVLEVVTSNWKYEPIFRSVKTDLFFPLHAELNVWRER
ADRLENYCLAQGIYGERWFEESRWFFKKYRGLEFHSKVQTDEERAMQAEIEAIRDEIRQP
LKLLQDKLEVATTGRDVATALFEIIEDLKVYDKLQTLKDRELDRGDALAASEHDQAWKEW
ITVLDQFVYMFGEQQMTVEEAAKILDEGFDTLEFSRIPPTLDEVMVATVDLARLSNIKVA
FVLGINDGIYPTRMEYEGLLSDIEREWFNQIGYELAPTSKNRLLQENFLVYRALTTPSDK
LFLSYPTADEEGKALLSSLYIKKIIGNGNTPGLLSGVAVERVVMDPIELLEDNPLPYLRH
PRTALAHLMMQLRQAEHSRELTPEWLALQKFYEQDPYWALIFERVLQPITHKNEAQPLET
YITQELYGQKLTSSVSRIEKYFRCPFSHFTTYGLRLEERAEYRLETFAMGDLFHEALKWI
TEETHRQQLSWVRLTKQQIKQLARQAVEQIVPVFSHQILLSSARYRYIQRKLIRIVERTM
TALTQHANVSHFKPIAIEASFGPGQHEQLPPLEIDLAGGKKMFMRGRIDRVDSASIDDRS
YLRIVDYKSSARDLDLNEVYYGLSLQVLTYLDVAMENSSYWLPGETEPAGVLYVHVHNPM
LKLDKDLSDSEIEEDRLKQYKMKGLLSENAEAILSMDEQLEESSGHSKIIPVYMKKDGTP
SESQSRIVPVNDMKNLQHFVRRKHQEAGNGILSGDTSISPYKLKSKTACDYCQFSAVCQF
DPSDGKQSYRQLMQAKPNEIVEKIRKEMK
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgacattgcgcattgtttcaggacgatcaggaactggtaaatcaacatttattcatcaa
gagattgttgagcaattaaaatcagagccattgggccatccgatttttgtgattgttcct
gaccaaatgtcttattcgacggagtatgaactaacgaataagcatggcttacaagggtta
atccgtgcacaggttatgacatttaaacgattagcatggcttgtattacaggaaactgga
ggcattgcacgaaaagaagttaatggatatggctatcgaatgcttattcgtaaactgtta
gaggaacaaaaagatgaattttcattatttcgccaagcggctggaaaaagaggttttaca
gaggaaatagagacattattacgtgagtttagtcgttatagtgtcaatagctcggtgcta
gcagaagtaactgcatccttaaaagccgtggaggctccgcatacattacaagctaaaact
aatgacttacaggtagttttacaagctttagaggctcgacttggtacgacttatgtcgat
agtgagggctattatccaatcttaaccgagcacttgaaagattctgagacgatgaagcaa
gctactatttatatagatggatttaccgcttttactgtgcgagagttggagttagtcaaa
gagctattaaaggtgacgaaacaagttacagttgttctaccctttgatcatattgatgaa
gcttatgatgagcagtctttatttcatgaagctgcattaaccaataaacgtttacacgat
attgcaaatgaagagggcattgaagtagatgcaccattacatttttactatacgtaccgt
tttcaatctaaagatttacagcatgttgaagaagaattttccaaattggtaccccaatca
atagaaacttctggtgatgttaaggtgcttgaagcatccaatcgacgcgctgagatacat
gccattgcccgggaaataacaaagcttacaaaggaggatggctatcgttatcaggatatt
gtgcttctttatagacaagcagaagtttatgatccacttatttcaacaatttttcagcaa
tatgaaattcctacttttacaaattctaaaaagaccatgctccatcatccattaatagag
cttagtcgttctgttttagaagtagttacttctaattggaagtacgaaccgattttccgt
agtgtcaaaacggatttatttttcccattacacgctgagctaaatgtttggcgtgagcgt
gcagatcgtttagagaattattgcttagcacagggtatttatggtgagcggtggtttgag
gaatctcgatggtttttcaaaaaatatcgaggtcttgaattccattctaaggtacaaacg
gatgaggaacgtgctatgcaggcggaaatcgaggctattcgagatgaaattcgacaacca
ctaaaattgttacaagacaagctagaagtagcgacaacaggtagagatgtagcgactgca
ttatttgaaataattgaggatttaaaggtctatgataagctgcaaactttgaaagatcgt
gaactggatcgaggtgatgccttagcagctagtgaacatgaccaagcatggaaagaatgg
atcactgtgcttgatcagtttgtgtatatgtttggggaacaacaaatgactgtcgaggaa
gctgcaaaaatactagatgagggctttgatacattagaattttcccgcattccacctacc
ttagacgaagtaatggtagcgacggttgatttagctcgtttatcgaatatcaaagtcgct
ttcgttttaggcatcaatgatggaatctacccaacacgtatggagtatgagggattatta
tcagatattgaacgtgaatggtttaaccaaattgggtatgagctcgcaccgacatctaaa
aatcgtttactccaagaaaatttcctagtatatcgagctttaacgacgccttctgataaa
ttgttcttgtcctatcctacagcggatgaagaagggaaggcgttattatcttcactttat
ataaagaaaataatcggcaatggaaatacaccaggtcttttaagtggagtagctgttgag
cgggttgttatggatccaattgaattactagaagataatccactaccatatttacgtcat
ccacgcacagctttagcccatcttatgatgcaactgcgacaagctgagcatagccgtgag
cttacaccagaatggctggcattacaaaaattttatgagcaggatccatattgggcactg
atttttgaacgggttctccaacccattacgcataaaaatgaagcacaaccacttgaaaca
tatattacacaggagttatacggtcaaaaactaacatccagtgtttctcgaattgaaaaa
tattttagatgtccgttttcgcattttacaacctatgggcttcggttagaggaacgtgca
gaatatagattagaaacctttgcaatgggtgatttattccatgaagcactgaaatggatt
acagaggagacacatcgacaacagctgtcatgggttcgtttaacgaaacagcagattaaa
caattggcacgccaagcagtggagcaaattgtgccagtcttttctcatcaaatcctacta
tccagtgcgcgctatcgttatattcaacgtaagcttatccgtattgttgaacgaacaatg
acagcattaacacagcatgcaaatgtttcccactttaagccaattgctattgaggcatca
tttggaccaggtcaacatgaacagcttccacctcttgaaatcgatttagctggtggaaag
aaaatgtttatgcgtggccgtattgatcgggtggatagcgcgtctatcgatgatcgctca
tatttacgcatcgtagattataaatcttcagctcgtgatttagatttaaatgaagtttac
tatggactatctttgcaggtccttacttatttagatgttgcgatggaaaacagctcttat
tggctaccaggcgaaacagagccagcaggggtactgtatgtacatgttcataacccaatg
ttaaagcttgacaaggatttaagtgatagtgaaattgaagaggatcgtttaaagcaatat
aaaatgaaaggattgctatcagagaatgcagaggccattttatcaatggacgagcagttg
gaagaatcaagtgggcattcgaaaattattcctgtatatatgaaaaaagatggaacacca
tccgaatctcagtcacggatagttcctgttaacgatatgaaaaatttgcagcattttgtg
cgtcgaaagcatcaagaggctggcaatggtattctatctggagatacttctatcagtccg
tataaattaaaatcaaaaacagcctgtgattattgtcagttttctgctgtttgtcaattt
gatccctctgatggcaagcaaagctatcgacaattaatgcaagcgaagccgaatgaaatt
gttgaaaaaatacggaaggagatgaagtaa
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integrated database retrieval system
