Lysinibacillus pakistanensis: GDS87_05595
Help
Entry
GDS87_05595 CDS
T06280
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
lpak
Lysinibacillus pakistanensis
Pathway
lpak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GDS87_05595 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpak03019
]
GDS87_05595 (pnp)
03016 Transfer RNA biogenesis [BR:
lpak03016
]
GDS87_05595 (pnp)
Enzymes [BR:
lpak01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
GDS87_05595 (pnp)
Messenger RNA biogenesis [BR:
lpak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GDS87_05595 (pnp)
Transfer RNA biogenesis [BR:
lpak03016
]
Prokaryotic type
tRNA degradation factors
GDS87_05595 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
SPATA25
KH_2
PIN_8
Motif
Other DBs
NCBI-ProteinID:
QGG50449
LinkDB
All DBs
Position
1237963..1240077
Genome browser
AA seq
704 aa
AA seq
DB search
MNEKKVYSYEWAGRPLVIEVGQLAKQANGAVLVRYGDTSVLSTATMSKSPKPLDFFPLTV
NYEERLYAAGKIPGGFIKREGRPSEKAILASRLIDRPIRPMFPDGFRNEVQVISMVMSND
PNCTSEMAAMVGSSLALAISDIPFDGPIAGVQVGYIDGEFIVNPTVEQSNHSTIHLSVAG
NKDAINMVEAGALEVPEEVMLEAIMFGHEEIKKIIAFQEQIVAEVGKEKLPVTLFEINEA
IQADIKAACESDMHDAIQTAEKHARDEAIQAVKDRVIASYEEQEANDETMKQVYTILDKM
VKDEVRRQITEDKIRPDGRKLDEIRPLSSETGLLQRTHGSALFTRGQTQALSICTLGALG
DVQIIDGLGVEESKRFMHHYNFPQFSVGETGPIRGPGRREIGHGALGERALEAVIPDESV
FPYTIRCVSEVLESNGSTSQASICASTLAMMDAGVPLKAPVAGIAMGLIKKGEYYSILTD
IQGMEDHLGDMDFKVAGTAKGVTALQMDIKIDGLSRNILEEALTQAKIGRMHILESMLAT
LAEPREKLSEFAPKIVIVKINPDKIRDVIGPGGKQINKIIEETGVKIDTEQDGTIYISSA
DEEMNARAKQIIEDIVREAKVGEYYLSTVKRIEKFGAFCEIFPGKDGLLHISEIQEERTK
QVEDVLKLGDQLLVKVIEIDKQGRVNLSRKVVIQEEKERAEQGK
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgaacgagaagaaagtctattcctacgaatgggctggccgtccacttgtaattgaagtt
ggacagttagcaaaacaagcaaatggagctgtattagtacgctatggcgatacttcagta
ctttcaacagcaacaatgtcaaaatcaccaaaaccacttgatttcttcccattaacagta
aactatgaagaacgcctttatgctgcaggtaaaattcctggcggctttattaaacgtgaa
ggtcgtccatctgaaaaagcgattcttgcaagccgtctaatcgaccgtcctattcgtccg
atgttcccagatgggttccgtaatgaagtccaagtaatttctatggttatgtccaatgat
ccgaattgtacgtctgaaatggcagctatggttggttcctcattagcactagctatttct
gatatcccattcgacggaccgatagcaggtgtacaagttggctatattgatggtgaattc
atcgtgaacccaacagtggaacaatctaatcattcaactattcatttatctgtagctgga
aacaaagatgctatcaacatggttgaggcaggtgcacttgaagttccagaggaggtaatg
ttagaggccattatgtttggtcatgaagaaattaaaaaaattattgctttccaagagcaa
attgttgctgaagtaggaaaagaaaaattaccagtaacattatttgaaattaatgaagcg
attcaagcagacataaaggcagcttgtgagtctgacatgcatgatgccattcaaacagcg
gaaaaacatgctcgtgatgaagcgattcaagcagtaaaagatcgtgttattgcttcttac
gaagagcaagaagctaatgatgaaacaatgaagcaggtttatacgattctagataagatg
gtaaaggatgaagtacgccgtcaaattacagaagataaaattcgtccagatggtcgtaaa
cttgatgagattcgtcctctttcatcagaaacaggattattacagcgtacgcatggttca
gcactatttacacgtggacaaacacaagcattgtcaatttgtactctaggggcacttgga
gatgtgcaaattattgatggattaggtgtggaagaatctaaacgttttatgcatcattat
aacttccctcaattctcagttggggaaacaggaccgattcgtggaccaggtcgtcgtgaa
atcgggcatggtgcgctaggagaacgtgcacttgaagcagttattccagatgaatctgta
ttcccatatacgattcgttgtgtatcagaagtgcttgaatcgaatggttctacttctcag
gcatccatctgtgcctccacgttagcaatgatggatgcgggtgttccattaaaagcacct
gtagcaggtattgcaatgggtcttattaaaaaaggtgagtattactccatcttaacagat
attcaaggaatggaagatcaccttggagatatggactttaaagttgcaggtacagctaaa
ggtgtaacggctctacaaatggacattaaaatcgatggattatctcgcaatattttagaa
gaagcattaacacaagctaaaattgggcgcatgcatattttagaatcaatgcttgcgaca
cttgctgaaccacgtgaaaaattatctgaatttgcaccgaaaattgtcattgtgaaaatt
aaccctgataaaatccgtgatgtcattggaccaggcggtaaacaaattaacaaaattatt
gaagaaactggggtaaaaattgatacagagcaagacggtacaatttacatctcttctgca
gatgaagaaatgaatgcacgtgcaaaacaaattattgaagatatcgtacgtgaagcaaaa
gtaggggagtactacttatcgacagtgaagcgtattgaaaaattcggtgcattctgtgaa
atcttcccaggtaaggatggtttacttcatatctctgaaatccaagaggaacgtacaaag
caggtagaagatgttttaaaacttggtgatcaattacttgtaaaagtgattgaaatcgac
aagcaaggacgtgtgaatttatctcgtaaagttgttattcaagaggaaaaagagcgcgct
gagcaaggtaaataa
DBGET
integrated database retrieval system
