Lysinibacillus pakistanensis: GDS87_05650
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Entry
GDS87_05650 CDS
T06280
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lpak
Lysinibacillus pakistanensis
Pathway
lpak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GDS87_05650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpak03019
]
GDS87_05650
Messenger RNA biogenesis [BR:
lpak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GDS87_05650
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
DUF2187
Motif
Other DBs
NCBI-ProteinID:
QGG50459
UniProt:
A0ABX6DBT8
LinkDB
All DBs
Position
1248321..1249988
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AA seq
555 aa
AA seq
DB search
MTKKKNELIRIIPLGGVGEIGKAMYVVEIDEELFVVDSGLMFPEDEMLGIDIVIPDITYL
EENKERVKGIFLTHGHEDAIGSIAYVLQKVKAPVYGSKLTIALAKEHLKELPAPHQVKFF
EVTNRSRMNFNSTYVTFFHTTHSIPDSLGVVFHTSEGAIVHTGEFKFDQSATGKFKPDLA
KMAHLGEEGVFILLSESCEAERPGYTTSEIVIEEQLSKTFHSAPGRILVAVYASNFIRIQ
QVFTQAQKSFRKVVIVGKPLEKAVDLGVQLGYLTVEDETIIPISEMHKYQDDEIIIIATG
NRGEPLDALEKIVRKHHRDIKIKQDDTVLITFTPSPGMEVQMANTMNSISKAGAEILTSS
KNVHVSGHGSQEDLKLMLNLMQPKYFIPVQGEYRMLIAHSKLAQQLGMQKSQIFIADKGD
IVEYKNGKMRMSGRVQAGNVLIDGIGVGDVGNIVLRDRKLLSQDGIFIVVVTLNRAQKKI
ASGPEILSRGFVYVRESEELMVEASDIAKNVIEKYVGKDTFEWTNIKQEIRDTLNTYLFQ
KTKRRPMIIPIIMEY
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaaaaagaaaaatgaattaattcgtatcattccactgggtggtgtgggcgaaatt
ggtaaagcaatgtacgtagtagaaattgatgaggagctatttgtagtagatagcggctta
atgttcccggaagacgaaatgctgggcattgatattgtaattccagatattacgtattta
gaagaaaataaagaacgtgtgaaaggcattttcttaacgcatggtcatgaagatgcgatt
ggctcgattgcctatgtattacaaaaagtaaaagcacctgtgtatggatcgaagctaaca
attgcacttgccaaggaacatttaaaggaattacctgcaccacatcaggtgaaattcttt
gaggttacgaatcgcagtcgcatgaatttcaactcaacgtatgtaacattcttccataca
acacatagtattcccgattcgttaggggtagtgttccatacatctgaaggagcaattgtt
catacaggtgagtttaaattcgatcaatccgcaacaggtaaatttaagcctgatttagct
aagatggcacacttaggagaagaaggcgtttttattttgctatctgagtcatgtgaagcg
gagcgaccaggttatacgacatctgagattgtaattgaagagcaattatcaaaaacattc
cattcagcaccaggtcgtattttagtggctgtgtatgcatcgaattttattcgcattcaa
caggtgtttacgcaagctcaaaaatcattccgtaaagttgtcattgttgggaaaccatta
gaaaaggctgtggatttaggtgtacagctaggttatttaacagttgaagacgaaacaatt
attcctatttcagaaatgcataaatatcaagatgatgagattattataattgccactggt
aatcggggagagccgcttgatgcgcttgaaaaaattgtacgtaagcatcatcgagacatt
aaaattaagcaggatgatacagtcttaattacttttacaccctcacctggcatggaagta
cagatggctaataccatgaactctatttcaaaagcaggtgctgaaattttgacatctagt
aaaaatgttcatgtatcaggtcacggaagccaagaagatttaaagctaatgcttaacttg
atgcaaccgaaatactttattcctgtacaaggggagtaccgtatgctgattgcgcattct
aaacttgctcaacaactgggtatgcaaaaatcccaaatttttatcgctgataaaggggat
atcgttgagtacaagaatggtaaaatgcgtatgagcgggcgtgtacaagctggtaatgtt
ttaattgatggtattggtgttggtgacgtaggtaacattgttctgcgtgatcgtaaatta
ttatcacaggatggtattttcattgtagttgtcacattaaaccgtgctcaaaagaaaatt
gcatctggaccagaaattttatcacgcggtttcgtttacgttcgtgaatcagaggagtta
atggtggaggcttctgatattgcgaagaatgttatagaaaaatatgttggtaaagataca
tttgaatggacaaacattaaacaagaaattcgagatacactgaacacatatttattccag
aaaacaaagcgccgcccaatgattatcccaatcattatggaatattaa
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