Lysinibacillus pakistanensis: GDS87_12255
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Entry
GDS87_12255 CDS
T06280
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lpak
Lysinibacillus pakistanensis
Pathway
lpak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GDS87_12255 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpak03019
]
GDS87_12255 (recQ)
03400 DNA repair and recombination proteins [BR:
lpak03400
]
GDS87_12255 (recQ)
Enzymes [BR:
lpak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GDS87_12255 (recQ)
Messenger RNA biogenesis [BR:
lpak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GDS87_12255 (recQ)
DNA repair and recombination proteins [BR:
lpak03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GDS87_12255 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
T7SS_ESX_EspC
Motif
Other DBs
NCBI-ProteinID:
QGG51674
LinkDB
All DBs
Position
2549191..2550969
Genome browser
AA seq
592 aa
AA seq
DB search
MEQARQMLQHHFGYDSFRNGQAQIIQQTLQGQSSLCVMPTGGGKSICYQIPALMLEGLTL
VISPLISLMQDQVEALRAANIPAAYINSTLSVQEVDETMQLASAGYLKLLYIAPERLESA
TFLQALSYLSVPLLAVDEAHCISQWGHDFRPSYRAIQKLFTLWPQKPTVLALTATATPAV
CEDIRQLLEIDEQSAVITGFARDNLAFSVLIGENKERYIKNYLTKNKLEAGIIYAATRKA
VDAIYDVLSRSGESVAKYHAGLAEEMRMSEQERFLKDEARIMVATNAFGMGIDKSNVRFV
IHYQMPRNMESYYQEAGRAGRDGLPSACILLYASGDVQTQRFLIEQTQDASRITQELVKL
QTMVDYCHTEGCLQNAILLYFGEKAGEPCGRCGNCNDGREVKDVTVDAQKVLACVVRMGQ
KFGKTMVAQVLIGSKNQKMTEFGFARLSTYGILKGQYSSKDVSSFIEFLIAEGLLAVKHG
TYPTIYVSEEGKAVLLGNRKVMRKEAVIVRKLADNDPLFEHLRALRKQIADEEQVPPFVV
FSDKTLRELCEQKPMELDGLRRVSGIGEVKFEKYGKRFFEALQSFLTEASNI
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atggagcaagcaagacaaatgctacaacatcattttggctatgattcattccgtaatgga
caggcacaaattattcagcaaacattacaaggacaatcaagtctttgtgtaatgccaaca
ggtggtgggaaatcaatttgctatcaaattccagctcttatgctggagggcttaacgctt
gtgatatcccctcttatctctcttatgcaagatcaggtggaagcattacgtgcggcaaat
attccagcagcttatattaacagtaccctttctgtacaagaagtggatgaaacaatgcag
cttgcaagtgcgggttatttaaagcttctttatattgcaccagagagattggaaagtgct
acatttttacaggcactatcctatttgtcagtaccgctattagctgtagacgaagcccac
tgtatttctcaatggggacatgattttagaccaagttatcgagcgatccaaaaattattt
acattgtggccacaaaagccaacagtcttagcccttacagctacagcaacgccagctgta
tgtgaggatataagacagttattagagattgacgagcaatcagcagttattacagggttt
gcgcgagataacctagctttttcagtattgatcggtgaaaacaaagaacgttatattaaa
aattacctcacaaagaacaagctggaagcgggcattatttatgctgccactcgaaaggct
gtggatgcaatatatgatgtcttaagtcgttctggagaatctgttgcaaagtaccatgct
ggactagcagaggagatgcgcatgtcagagcaggaacgttttttaaaagatgaggcgcgt
attatggtggcgactaacgcatttggcatggggatagacaagagtaatgtacgtttcgtt
attcactatcaaatgccacgcaatatggaaagctattatcaggaagctgggcgcgcagga
cgcgatggtttaccaagtgcctgcattttactatatgcatcaggggatgttcaaactcag
cgtttcttaattgaacagacacaggatgcatcccgaattacccaggaactagtaaagcta
caaacgatggtggattactgtcatacagaggggtgtttacaaaatgcaattctcctctat
tttggtgaaaaggcaggagagccatgtggtcgttgcggtaattgtaatgatgggcgagag
gtcaaggatgtaacggtggatgcgcaaaaggtgctagcctgtgtcgtacggatggggcaa
aaatttggcaagacaatggtggctcaggtgctaattggctccaaaaatcaaaagatgacg
gaatttggctttgcacggttgtctacttatggcattttaaaagggcaatactcttcaaaa
gatgtctctagttttattgaatttttaattgcggaaggattactagccgttaagcacggt
acgtatccaactatctatgtatcagaggaaggcaaggcggttttacttggcaatcgcaag
gttatgcgaaaagaagctgttattgtacgtaagttggcagacaatgatccgctgtttgag
catttaagagcattgcgaaaacagattgcagatgaggaacaagtaccaccatttgtggta
ttctctgataaaacattacgagaattatgcgagcaaaagccaatggagcttgatggctta
cgacgtgtgagtggaattggtgaagtaaagtttgaaaaatacggcaaacgattcttcgag
gcactccaatcgttcttgacggaagcatccaatatttag
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