Lysinibacillus pakistanensis: GDS87_14115
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Entry
GDS87_14115 CDS
T06280
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
lpak
Lysinibacillus pakistanensis
Brite
KEGG Orthology (KO) [BR:
lpak00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lpak03016
]
GDS87_14115
Enzymes [BR:
lpak01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
GDS87_14115
Transfer RNA biogenesis [BR:
lpak03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
GDS87_14115
Prokaryotic type
tRNA splicing ligases
GDS87_14115
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RtcB
Ins_allergen_rp
Motif
Other DBs
NCBI-ProteinID:
QGG52005
UniProt:
A0ABX6DB28
LinkDB
All DBs
Position
complement(2938213..2939433)
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AA seq
406 aa
AA seq
DB search
MITVNGRFTEAKIYAKTALPSAIDQIQELTDQAFMAGTKIRIMPDYHAGKGCVIGTTIQL
QDRVVPNLVGVDVGCGVFVAELDASAIDFAKLDATIRDYVPSGQDVHPEVSPTRQFIEFE
GNQFKASGIKDEYTNLSLGTLGGGNHFIELAKDENDVHYLLIHTGSRYVGAKVANWHQKR
AYETLRREDLTVKIDELKEQGRHKEIQAMIKAHKEQNPLVPKDLAYLEGEFFHDYMHDMK
IAQQYARMNRWIIAETIAQHMGWNFNETFDTIHNYIDTDTMTLRKGAVRANKGEKLVIPM
NMRDGSLICVGKGNEDWNFSAPHGAGRMYSRRAAKATLNMADFKETMQGIWTTSVNEETL
DEAPMAYKPMIEITSAIEETVDIIKVIKPVYNFKASEAAMPYDRKK
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgattactgttaacggacgttttacagaagcgaaaatttatgctaaaaccgcactgcca
tcagctattgatcaaattcaagaattaacagatcaggcctttatggcaggcacgaaaatt
cgaattatgccagattaccatgcagggaagggatgtgtgattggcacaactattcagcta
caagatcgagtagtccctaaccttgtcggtgttgatgttggctgtggtgtttttgtagcg
gaattggatgcatcagctattgattttgctaagctggatgcaactattagagattatgta
cctagtgggcaggacgttcatcctgaagtttcacctacacgccaatttatagaatttgaa
ggaaatcaatttaaggcgagcggaataaaggatgaatataccaatctatcattaggtaca
cttggtggaggaaatcatttcatcgaattggcaaaagacgaaaacgatgtccattattta
ttaattcatactggctctcgatatgttggcgccaaagtagctaactggcatcaaaagaga
gcctatgaaacattgcgtcgagaggatttaacagtaaagattgatgagctgaaagaacag
gggcgtcacaaagaaatacaagcaatgataaaggcccacaaagaacaaaaccctttagtt
cctaaagacttagcttatttagaaggcgagtttttccatgattatatgcatgatatgaaa
atcgcgcagcaatatgctcgaatgaatcgttggatcattgctgaaacaatagctcagcat
atgggctggaattttaatgaaacctttgatactattcataactatattgatacagatacc
atgacattacgaaaaggagcagttcgtgccaataaaggagaaaaattagtcattcctatg
aatatgagagacggctcgctgatttgtgtgggaaaaggaaatgaggattggaatttctca
gcacctcatggagcagggcgaatgtactctagacgagcagctaaggcgacattaaatatg
gctgattttaaagaaacaatgcaaggtatatggacaacatccgtaaatgaagaaacatta
gatgaggctcctatggcctacaagccaatgatagagattacatcggctattgaagaaacg
gtggatataatcaaagttattaaacctgtttataattttaaggcgagtgaagcagcaatg
ccgtatgatcgaaaaaaataa
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