Lysinibacillus pakistanensis: GDS87_16490
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Entry
GDS87_16490 CDS
T06280
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
lpak
Lysinibacillus pakistanensis
Pathway
lpak03030
DNA replication
lpak03430
Mismatch repair
lpak03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lpak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GDS87_16490 (holA)
03430 Mismatch repair
GDS87_16490 (holA)
03440 Homologous recombination
GDS87_16490 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lpak03032
]
GDS87_16490 (holA)
03400 DNA repair and recombination proteins [BR:
lpak03400
]
GDS87_16490 (holA)
Enzymes [BR:
lpak01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GDS87_16490 (holA)
DNA replication proteins [BR:
lpak03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GDS87_16490 (holA)
DNA repair and recombination proteins [BR:
lpak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GDS87_16490 (holA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_delta_C
DNA_pol3_delta
HP_1247_M
TruD
Motif
Other DBs
NCBI-ProteinID:
QGG52432
UniProt:
A0ABX6DF10
LinkDB
All DBs
Position
complement(3429341..3430351)
Genome browser
AA seq
336 aa
AA seq
DB search
MISTVWNNIKKGQLSPVYLLVGEENYFIDETVKRIKEAMGPEEELELSTFDLEEVPVDAV
MDEADTIPFFSERKLIIAKNASFLKATEKGKEKIDHDIKRLEAWLANPSDFSITIFIAPY
EKLDERKKVTKMMKEHALLVQTETPKEQDLAVWVQSVVKAEGNSITQNAIEQLVAMVGPN
MLQLQMEIEKLSLYLGDGGEITTSLVEDLVAKTLEQDAFKMLNAYFANDSVGALTIYHDL
LRQKQEPIMLVGLLASNVRTMSNVFYLLKKGYHPQQIAKNLKIHPYRVKLMVEQRNRPSE
ESLLKALYQLAEVDLQLKSTGGNRERYLELFLLRQL
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgatttcaacggtttggaacaatatcaaaaaaggacaactctcaccagtttatttactc
gttggtgaagaaaactattttatagatgaaacggtgaaacgtataaaagaggcaatgggg
ccagaagaagagctagaattgtctacatttgatttagaggaagtacctgtcgatgctgtg
atggatgaagcagataccattccttttttctctgagcgtaagctaattatagccaaaaat
gcctcttttttaaaagcgactgaaaagggaaaggaaaaaatcgaccatgacattaagcga
ttggaggcatggctggcgaatccctctgatttttcgataactatatttatcgcaccctat
gaaaaattagatgaacgtaagaaagtaacaaaaatgatgaaggaacatgcgctattagta
cagactgaaacgccaaaagaacaggatttagccgtatgggttcaaagtgttgtaaaagca
gagggcaatagtattacacaaaatgctattgagcagcttgtagcgatggttggacctaat
atgctacagctacaaatggaaattgagaagctaagtctttatttaggtgatggaggagaa
attacaacttcgttagtcgaggatttagtcgctaaaacattagagcaggatgcctttaaa
atgttaaatgcttattttgcaaacgactctgtcggggctttgacaatttaccatgattta
ttgcgtcaaaagcaagagccaatcatgcttgttggattgcttgcatccaatgtacgaacg
atgtccaatgtattttatttattgaaaaaaggctatcatccacagcaaattgcaaaaaat
ttaaagatacatccatatcgtgtgaagttaatggtggagcagcgtaatcgtccatcagag
gagagtctgctgaaagcattgtatcaattagcagaagtcgatttacagttaaagtccact
gggggaaatcgtgagcgttatttagagctttttttattgcgtcaactttaa
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