Lysinibacillus pakistanensis: GDS87_16900
Help
Entry
GDS87_16900 CDS
T06280
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
lpak
Lysinibacillus pakistanensis
Pathway
lpak03410
Base excision repair
lpak03430
Mismatch repair
lpak03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lpak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GDS87_16900 (recJ)
03430 Mismatch repair
GDS87_16900 (recJ)
03440 Homologous recombination
GDS87_16900 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lpak03400
]
GDS87_16900 (recJ)
DNA repair and recombination proteins [BR:
lpak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
GDS87_16900 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
GDS87_16900 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GDS87_16900 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
tRNA_anti_2
DUF2316
Motif
Other DBs
NCBI-ProteinID:
QGG52507
UniProt:
A0ABX6DF93
LinkDB
All DBs
Position
complement(3514458..3516776)
Genome browser
AA seq
772 aa
AA seq
DB search
MILSKKRWRVERPDAKLVQTLQNDLQLSAIAAKILAARGCTTTTDAESLLNMTEANIHDP
FLMHNMAEAVARIEQALENGEKILVYGDYDADGVTSTTVMLNVLLDLGADVSFKIPNRFI
HGYGPHGDLFREACDEGVKLIITVDNGISGIEPIRIAKDLGMDVIVTDHHEPGDELPPAD
IILHPRIPEGHYPFGELAGVGVTFKLAHALYRELPTHLIELVAVGTIADLVPLVDENRYL
VKRGIEEMRRSLSPWVLAMCEVASAEQAKINEETIGFYFGPRLNAVGRLGEAAPGVELLM
AEDHAKATALAKQLNACNSERKDIVKSITDQAVALIESDEKIRNSLVIVIAGEGWNAGVV
GIVASRLVELYYRPTIVLSLDNEKGTAKGSARSIEGFHLYNELAKNRDILPHFGGHPMAA
GMTLASEHVDELRLRLDAQAKACLSQEQLTPVLTIDIPLKLDEISADAIEEISTLGPYGT
DFPKPVYVLEDVEISSMRKIGAAENHIKMELTDGYEKLDSVGFNKGHLHDELTYGIKVSF
TGDLQINEWQGRKKAQFMIEDVQTTEWQLFDIRGIRQTARWLNTIPKEEVTFIAFRQETV
TYYQSLIGEPILAVDSSLSNVEQSNYIVLLDLPQNVQLLENVLQKTAPSRIYAHFYMPDS
QYFNGLPTREQFAWYYKFLKNRPAFPLNMHLADLAKHTGWPLDALKFMTQVFFELGFVKM
ESGLTTVNVNATKQALTEAPSYKQRSEQIEMEQKLVYAPYIELKQWFDERLH
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atgattctatcaaaaaaaagatggcgagtggagcgaccagatgccaaacttgtacaaaca
ttacaaaatgacctacagctatctgcaattgcggcaaagattttagcggcacggggctgc
acaacaaccactgatgcagagagtttattaaatatgacagaagcaaatattcatgaccca
tttttaatgcataacatggcagaagctgtggcacgtattgagcaagcacttgaaaatgga
gaaaaaatattagtttatggtgattatgatgccgatggtgtgacaagtacaactgtcatg
cttaatgtgctacttgatcttggagcggatgtatcgtttaaaattccgaatcgttttatt
catggctatggacctcatggggatttatttcgtgaagcatgtgacgagggtgtcaagcta
attattacagtagataatggaatttcgggcattgaaccgattcgtattgcaaaggacctt
ggaatggatgttattgtcacagaccatcatgaacctggcgatgaattaccaccagcggat
attattttacatcctcgtataccagaagggcattatccatttggcgagcttgcaggtgta
ggtgtcacttttaagttagcgcatgccctatatagggagttacctacacatttaatagaa
ttggtagctgtcggaacaattgcagatttagtaccattagtggatgaaaatcgctatctt
gtcaaacgaggaatagaagaaatgcgccgttctcttagcccttgggtattggcaatgtgt
gaagtagcaagtgccgagcaagctaaaatcaacgaagaaacaatcggcttttattttggt
cctcgcttaaatgcagttggtcgccttggcgaagcagcaccaggtgtagagctattaatg
gccgaggatcatgcaaaggcaacagcattggcaaaacagctcaatgcatgtaatagtgaa
cgcaaagatattgttaaaagcataacagatcaggcagttgctcttattgaatcggatgaa
aaaattcgcaattcacttgttatagttatagcaggagagggctggaatgcaggtgtcgtg
ggaatagttgcatctcgacttgttgaactttattaccgtccaacaatcgtactttcatta
gacaatgaaaaagggacagcaaaaggctctgcccgtagtattgaaggattccatttgtac
aatgaactagccaagaatagagatatactgcctcattttggtggacatcctatggcagcc
ggcatgacattagctagcgagcatgttgacgaattaagattacgcttagatgctcaagca
aaagcttgtttatcacaggagcaactgacacctgtattgactatcgacattcctctgaag
ctggatgaaatttcagcagatgccattgaagaaatttcaacgcttggtccatatggtaca
gattttccaaagcctgtttatgtgcttgaagatgtagagatatcctctatgcggaaaatt
ggggcagcagaaaaccatataaaaatggaattgacggatggctatgaaaaattggatagt
gtcggtttcaataaaggacatttacatgacgagttaacatatggaataaaagtatcattt
actggggatttacaaattaacgaatggcaagggcgtaaaaaagcacaatttatgatagag
gatgtccaaacgacagaatggcaattatttgatattcgtggtattcgtcaaacggctcgc
tggttaaataccattccgaaagaagaagtaacttttattgccttccgtcaagagacggtg
acttactaccaatctcttattggtgagcctattttagcagtagattcttcactttcaaat
gtggaacaaagcaattatatcgtgcttttagatttaccacaaaatgttcaactgttagaa
aatgtcttgcaaaaaacagctccatcccgtatttatgcacatttctatatgcctgattcg
caatatttcaatgggttgccgacccgcgagcaatttgcttggtactataaatttttgaaa
aaccgtcctgcttttccactcaatatgcatttagctgatttagcaaagcatacaggttgg
ccgttagatgcattaaaatttatgacacaggtgttttttgagcttggttttgttaaaatg
gagagtggactgacgactgtcaacgtgaatgccacaaaacaggcgcttacggaggcaccg
tcttacaaacaacgttcagaacagattgaaatggagcaaaagctagtttatgcgccttat
atagaattaaaacaatggtttgatgaacgattacattaa
DBGET
integrated database retrieval system
