Lysinibacillus pakistanensis: GDS87_17895
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Entry
GDS87_17895 CDS
T06280
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
lpak
Lysinibacillus pakistanensis
Pathway
lpak03030
DNA replication
lpak03410
Base excision repair
lpak03420
Nucleotide excision repair
lpak03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lpak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GDS87_17895 (polA)
03410 Base excision repair
GDS87_17895 (polA)
03420 Nucleotide excision repair
GDS87_17895 (polA)
03440 Homologous recombination
GDS87_17895 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lpak03032
]
GDS87_17895 (polA)
03400 DNA repair and recombination proteins [BR:
lpak03400
]
GDS87_17895 (polA)
Enzymes [BR:
lpak01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GDS87_17895 (polA)
DNA replication proteins [BR:
lpak03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GDS87_17895 (polA)
DNA repair and recombination proteins [BR:
lpak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
GDS87_17895 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GDS87_17895 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_polI_exo1
5_3_exonuc
HHH_5
HHH_2
FUR
NYN_YacP
Motif
Other DBs
NCBI-ProteinID:
QGG52687
LinkDB
All DBs
Position
complement(3721486..3724113)
Genome browser
AA seq
875 aa
AA seq
DB search
MTKEKLLLLDGNSLAYRAFFALPLLTNDSGIHTNAVYGFTTMLQRILEEEQPSKILVAFD
AGKTTFRHETFTEYKGGRQKTPPELSEQFPYLRKLIDAYGIKQYELELYEADDIIGTLAK
EASSQDIDVIIVSGDRDLTQLATEQVTVYITKKGITEIEKNTPAYIEEKYGLTPSQIIDM
KGLMGDASDNIPGVPGVGEKTAVKLLKEHGSVESLYKAMDTLKASKMKEKLVANEEQAIM
SKKLATIFTDAPIEVALTDLAYNGPNEEELINVWRELGFKSLLEKSDFSVQEEEQAPFDY
EIVQEVKQEHLKDVMAVHLELADEHYHTCQQLGIALTDGAKPIYVPFDIVAKSDVLRLWL
EDATKIKYMSDSKAAQAALRRAGIRLAGVDFDLLLASYINNPGLSGDDVATLAKELGYRD
VQANETVYGKGAKRAIPTIDTLAEHASRKAFAVWSVQPKLETLLKENEQFDLYKNLELPL
ASILGEMESEGITVNRATLEKMGQELNDKLVIIEQEIYKEAGEAFNINSPKQLGVILFDK
LGLPVIKKTKTGYSTAADVLEKLKSEHTIIEHILLYRQLGKLQSTYIEGLLKEIHNDDGK
VHTRFQQALTATGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSKEGWILFSADYSQIELRV
LAHMSEDKNLVEAFREGMDVHTRTAMDVFHVSADEVDSNMRRAAKAVNFGIVYGISDYGL
SQNLDITRKEAATFIEKYFASFPGVKQYMDDIVQDAKFNGYVTTILNRRRYLPDITSSNF
NIRSFAERTAMNTPIQGSAADIIKKAMIDMDARLKKENMQAKLLLQVHDELIFEAPKEEI
ALLEKIVPEVMEHAIELTVPLKVDFNHGATWYEAK
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaggaaaaattactattattggacggtaatagtttagcgtatcgcgcgtttttt
gcgttgccattgttgacaaatgatagtggcattcatactaatgctgtatacggctttaca
acaatgctacaaagaatattagaggaagaacaaccatcgaaaatcttagtggcttttgat
gctgggaaaacaacattccgtcatgaaacctttacggaatataaaggtgggcgacaaaag
actccgccagaattatctgagcaattcccttatttacgtaagctcattgatgcatatggt
attaagcagtacgagttagaactgtatgaagcggacgatataataggaacacttgctaaa
gaagcttcatcacaggatatcgatgtcatcattgtttctggagatcgtgatttaacacag
ctcgccacagagcaggtaactgtgtacattactaaaaaaggtataactgaaattgagaaa
aatacaccagcttatattgaagaaaaatatggcttaaccccttcgcagataattgatatg
aaagggcttatgggggatgcttccgataatattcctggagtacctggtgtcggtgaaaaa
acggctgttaaattgctgaaagagcatggttcagtagagtcgttatataaagcgatggat
acattaaaggcttcgaaaatgaaagaaaaattagtagccaatgaagagcaggcaattatg
agtaaaaagcttgcaaccatttttacggatgcgccgatagaggttgcacttactgatctt
gcttataatggtccgaatgaagaagagctaataaatgtctggcgggagcttggctttaaa
tcactgctagaaaaaagtgatttttctgtccaagaagaagaacaagcaccatttgactat
gaaattgtgcaggaagtaaagcaagaacacttaaaggatgttatggcagtgcatttggag
ctggcggacgaacattatcacacatgtcagcaactaggcatagctctaactgatggagcg
aaaccaatttacgtaccttttgatatagtggctaaatcagatgttcttcgtctatggcta
gaggatgcgacaaaaataaagtatatgtcagattcaaaggcagcccaagcggcattaaga
cgtgcagggattcgtttagcaggagttgattttgatttattgcttgcttcttatatcaat
aatcctgggctaagcggagatgatgtagcaacacttgcgaaggaacttggctaccgtgat
gtgcaggcaaatgagaccgtttatggtaagggtgccaaacgagctatacctaccattgat
acactagcagagcatgcaagccgcaaagcttttgctgtgtggtcagtacagccaaagctt
gagacattgctaaaggaaaacgaacaatttgatttatataaaaatctagaactcccatta
gcttctatactgggcgagatggaaagtgaaggaattacagtcaaccgtgctactttagag
aagatgggacaagaattgaatgacaaattagttattattgagcaagagatttataaggaa
gctggagaagcctttaatattaattcaccaaaacaattaggggttattttatttgataag
cttggactgccagttattaaaaaaacgaaaacaggctactcaacggcagcagatgtgtta
gaaaaattaaaatcggagcatacgattattgagcatattcttttatatcgtcagttaggt
aaattacaatcaacctatattgaaggcttgcttaaagaaattcataacgatgacggcaag
gtgcatacccgtttccagcaagcattaacggctacaggacgtctaagctcaacagatcca
aatttgcaaaacattcccattcgtttagaggaggggcgcaaaatccgtcaagcatttgta
ccgtcaaaagagggctggatactgttttcggctgactactcacaaattgaattacgcgtt
ctggcacatatgtcagaagataaaaaccttgtagaggccttccgtgaagggatggacgtt
catacacgtacagcaatggatgttttccatgtatcagcagatgaggttgatagtaatatg
cgtcgtgcagcaaaggcagttaactttggaattgtctatggaattagtgattacggttta
tcacaaaacttagatattactcgtaaggaagcagcaacatttattgaaaaatatttcgca
agttttccaggggtaaaacagtatatggatgatattgtgcaggatgcgaagtttaatggt
tatgtcactacgattttaaatagacgtcgatatttacctgatatcacaagctccaatttc
aatatacgtagctttgcagagcgcactgccatgaatacacctattcagggaagcgctgca
gatattattaaaaaagcaatgattgatatggatgctcgcttgaaaaaagagaatatgcag
gcaaagcttcttttacaggtgcatgatgaattaatttttgaagcacctaaggaagagatt
gcattgcttgaaaaaattgttcctgaggttatggagcatgccatagagcttaccgtaccg
ttaaaagtagacttcaaccatggagcaacttggtacgaagcaaaataa
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