Lysinibacillus pakistanensis: GDS87_17995
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Entry
GDS87_17995 CDS
T06280
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
lpak
Lysinibacillus pakistanensis
Pathway
lpak03030
DNA replication
lpak03430
Mismatch repair
lpak03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lpak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GDS87_17995 (dnaE)
03430 Mismatch repair
GDS87_17995 (dnaE)
03440 Homologous recombination
GDS87_17995 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lpak03032
]
GDS87_17995 (dnaE)
03400 DNA repair and recombination proteins [BR:
lpak03400
]
GDS87_17995 (dnaE)
Enzymes [BR:
lpak01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GDS87_17995 (dnaE)
DNA replication proteins [BR:
lpak03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GDS87_17995 (dnaE)
DNA repair and recombination proteins [BR:
lpak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GDS87_17995 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
HHH_6
PHP
tRNA_anti-codon
TCL1_MTCP1
BOF
FGE-sulfatase
Motif
Other DBs
NCBI-ProteinID:
QGG52707
LinkDB
All DBs
Position
complement(3746310..3749390)
Genome browser
AA seq
1026 aa
AA seq
DB search
MTHVYTKMHTSADLLKSTIRLEQLIPFLQEQKTQACAIVNSKLYGLLPFCRALQQANIHA
VVGLSINIQWQELQIPLVLYAKTQEGYQHLLKISSAVSIREDEVLPWKWLKGYAAGCIAL
LSSNDIMEIGHWTEAASALKALFGQHLFMGVARPAGMIAETEQDCVTWCKNESVPLVASQ
SCYFLRPEDHFAYEVVRAIDTGEKCTDTKVSALQGYFVPTQSEWSTWFADRPEWLEASAA
MLASCTAKIPNMPVQMPKFPVPIGETAENLLVKEAFTGLTMRFNEHEIPPAYKERLQYEL
EIICSMGFADYFLIVADFMQYAKENQILTGPGRGSSAGSLVAYSLSITQVDPLAYGLIFE
RFLNPERISLPDIDIDFVDNKRQKVIQYVAHKYGKANVAQIITFGTLSAKAVARDVARAL
GFEAETLEKISKLIPNKPGMTLQKAVAESQGLQGWIAEDEKHRRWLEVALKLEGLPRNSS
THAAGVVLAPSPLVNTMPIEKGHDDIYCTQWPMGDVEACGLVKMDFLGLRNLTILEQIRW
SIYKARGPWIEFERIPMQDEKTFQLLQRGDTLGIFQLESEGMKQALRDIKPTHFLDIVAV
NALYRPGPMDFIPIYAKRKSGQELVVMPHPVLEPILQETFGVIVYQEQIMQIASIMAGFS
MGQADLLRRAVSKKNRQVLEEQRAVFVNGAMKQGYDIHIAEEVYALIVRFADYGFPKSHA
VAYSVISYQMAYLKAHYPKSFYAALLSNATGNVEKIQQLVNEAKEQGIIFYPPSLKHSTK
YFTVENDGIRYSLSGIKGVPHPLIEMVKAIQQSNVEALNNLFDLAVALSAQHFKPKVIES
LIFAGALDYLEKDRAVLIKTVEAALKHAELLRPTVEIDWASATAFSFGKPKYMQAQEMTQ
KEKLMHEKEVLGFYISAHPVTEERAFWPDANVTCRELKHTRDGSYVKVIGLIEEIKKIRT
KRGEQMAFAQLQDEYGTVSITLFPQVFQLVQDFLKEDEILYIEGTVERRFGKAQVKVKHA
QTTKKI
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
ttgacacatgtatatacgaaaatgcatacgagcgcggatttattgaaaagcacgattcgg
cttgaacaattgatcccttttttacaagagcaaaaaacgcaggcctgtgcaatcgtcaat
tcgaaattgtatgggcttttgcctttttgtagggcgttacagcaagcaaatattcatgct
gtagtgggtctttctataaacatacaatggcaggagttacaaattcctttagttttatat
gcaaagacacaagaaggctatcagcatttattaaagattagtagtgctgtttcgataaga
gaggatgaagttttgccttggaaatggctgaaggggtatgcagcaggctgtatagcattg
ctttcctctaatgacataatggaaattggacattggacagaggcagcaagtgcactaaaa
gcattatttggtcagcatttatttatgggagttgctagaccagcagggatgattgcagaa
acagaacaggattgtgttacatggtgtaaaaacgaaagcgttcctttagtcgcttcacaa
agttgttattttctacgacctgaagaccactttgcttacgaggtggtaagagctattgat
acaggtgaaaaatgcacggatacaaaggtatccgccttgcaaggttattttgtgccaact
cagagtgaatggagcacctggtttgctgatcgtcctgaatggcttgaagcgagcgcagca
atgttagctagctgtactgccaaaattcctaatatgcctgtgcaaatgcctaaatttcca
gtgccaataggagagactgctgagaacttgcttgtcaaagaggcgtttactggattaaca
atgcgcttcaatgagcatgaaataccacctgcttataaagagcgactgcaatatgagctt
gaaattatttgttcaatgggctttgcggattattttttaattgttgcagattttatgcaa
tatgccaaagaaaatcaaattttaacagggccaggccggggttcatcagcgggatcactt
gtagcctatagtctttctataacacaagtagaccctctagcatatggattaatattcgag
cgttttttaaatccagaacgtatttctttgccagatattgatattgattttgtagataat
aaaagacaaaaagttatacaatatgttgcacacaaatatggtaaggcaaatgtcgcgcag
attattacatttggtacattatctgcaaaagctgtggctcgggatgtagctcgagcttta
ggcttcgaagctgaaaccttagaaaagatttcgaaattgattcctaataaacctggaatg
acgctacaaaaagcggtcgcagaatcacagggcttacaaggctggatagcagaggatgaa
aagcatcgtcgttggttagaagtagctttgaaattagagggtttgccaagaaattcctct
acacatgctgctggggttgtattagcaccatcccccttggtcaatacaatgcctattgag
aaggggcatgatgatatttattgtacgcaatggccaatgggtgatgtagaagcatgtggt
cttgtgaaaatggactttttaggcttgcgtaatttaacaattttagagcagatacgctgg
tcaatttataaagcaaggggaccatggatagagtttgaacgaatccctatgcaagatgaa
aaaacattccaacttcttcaaaggggagatacgttagggatttttcagttggaatctgaa
ggcatgaagcaagctttacgggacattaaaccaactcattttttagatatagtggcagtc
aatgctttatatcggccaggtccaatggattttattccaatctatgcaaaacggaaatca
ggacaagaattggtggttatgccacatccagtgttagagccgattttacaagagacattt
ggtgttatcgtttatcaggaacagatcatgcaaattgcctcgataatggcaggcttttcg
atgggacaggcagatttactgcgtcgagcggtcagcaagaaaaatcgccaagttttagag
gagcaacgtgctgtatttgtcaatggagcgatgaagcaaggttacgatattcatatagca
gaagaagtgtatgcactgattgtacgttttgcggattatggcttccctaaaagccatgca
gttgcatatagtgttatttcctatcaaatggcctatttaaaggcgcattatccaaaaagc
ttttatgcagcgttattgtcgaatgcaacaggaaatgtggaaaagattcagcagcttgtg
aatgaagccaaagagcagggtataattttttacccaccctcattaaaacatagtactaaa
tatttcactgtagaaaatgatggcattcgctatagcttatcgggaattaaaggtgttcct
catcccttaattgagatggttaaggccatacaacaatcgaatgtagaggcattgaataat
ttatttgatctagcagttgctttaagtgctcagcattttaaaccgaaagtaatagaatct
ttaatttttgctggagcccttgattatttggagaaagatcgtgctgtacttattaagact
gtagaagcagctttgaagcatgcagagctattaagacctacagtagagattgattgggcc
tcagctactgcctttagcttcggtaagcccaaatatatgcaagctcaagaaatgacgcaa
aaagaaaaactgatgcacgagaaggaagttttagggttttatatatcagcacatcctgta
acagaagagcgagctttctggccggatgccaatgttacatgcagagagttaaaacataca
cgagatggaagctatgtcaaagtgattggcttgattgaagagataaaaaaaattcgcaca
aaaagaggtgagcaaatggcctttgctcagctgcaagacgaatatggtacagtgtccatc
accctatttccacaagtatttcagcttgtgcaggactttttaaaggaggatgaaatactt
tatattgagggtacagtggaacgacgatttggaaaggcacaggtgaaagtaaaacacgca
caaacgacaaaaaaaatataa
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