Lysinibacillus pakistanensis: GDS87_21025
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Entry
GDS87_21025 CDS
T06280
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lpak
Lysinibacillus pakistanensis
Pathway
lpak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GDS87_21025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpak03019
]
GDS87_21025
Messenger RNA biogenesis [BR:
lpak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GDS87_21025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
RMMBL
Lactamase_B_6
DUF5093
MPS2
Motif
Other DBs
NCBI-ProteinID:
QGG53218
UniProt:
A0ABX6DHW1
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All DBs
Position
4367930..4369603
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AA seq
557 aa
AA seq
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MSTKNNLLSIFALGGINEIGKNMYVVQYGNDMLIIDCGAKFPDESLLGIDLIIPDITYLQ
EHKEKIKALIVTHGHEDHIGGIPYLLKKLNVPIYATRFTLGLIELKLKEHKLLRETDLIE
IHSDSLLNLGQVDVSFFRTNHSIPDCLGIVFHTPEGNVVHTGDFKFDLTPVNNQFADIHK
MAEIGTNGVLALISESTNAERPGLTPSEMLVGEHIEEAFLHAERKIIISTFASNVNRIQQ
IVNATIATNRKLALLGRSMVNVVDVALERGYLNMPEDMLIDAREVKYLPPEEVVILCTGS
QGEPLAALSRLASGSHREVKILPDDTVILASSPIPGNEKGVSRIVDNLFQLGAKVIYGSS
SHTGMHVSGHGYQEDLKLMLTLMKPKFFIPIHGEFRMLHQHRLLAESVGVKRGHTFIMKN
GDVVDIENEKARQTRKIPSGDTYVDGIGIGEVEGIVLRDRKQLSEDGMLVIVLTLSKADG
TFISEPDTISRGFVYAKDFEELLTKVNFLVKETVNELQEEGRQQIHVLKREIKRAVGQYL
FTQTKRKPMILPIIIDI
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
ttgtccacaaaaaacaatttattatctatttttgctttaggtggcattaacgaaattggc
aaaaatatgtatgtagtacagtatggaaacgatatgctaatcattgactgtggtgcaaag
tttccagatgaaagcttgctgggaattgatttaatcatccctgatattacgtatttacag
gaacacaaagaaaaaattaaagcattaattgtgacacatgggcatgaggatcatattgga
ggaattccttaccttttaaaaaagttgaatgttcctatttatgccacacgatttacgctt
ggattaatcgaattaaaactaaaagagcataagcttttacgagaaaccgatttaattgaa
attcattctgattcattattaaaccttggacaagttgatgttagtttcttccgaacaaat
catagtatacctgattgtctaggaatcgttttccatactcctgaaggaaatgtagtacac
actggtgattttaaatttgatttaacgcctgttaacaatcagtttgcagatattcataag
atggctgaaatcggcacaaatggcgtattggcccttatctctgaaagtaccaatgctgaa
agaccagggttaacaccttcagaaatgcttgtcggtgagcatattgaagaagcattttta
catgccgagcgtaaaattattatttctacgtttgcctcaaatgtgaatcgtattcaacaa
attgtcaatgctactatcgctacgaatagaaagcttgcattgttaggtcgcagtatggtg
aatgtggtagatgtagctcttgaacgaggatatttaaatatgccagaggatatgttaatt
gacgcacgtgaagtaaaatatctcccacctgaggaagtagtcattctatgtacaggtagt
caaggggagccattagcagctctatcacggctagcaagtggtagtcatcgtgaggtaaaa
atcttacctgatgacaccgttattttagcttcatcccctattccaggaaatgagaagggt
gtttcacgcattgtcgataatttatttcagcttggggcaaaggttatttatggctcctct
agccacacaggtatgcatgtttcaggacatggctatcaggaggatttaaaactaatgctc
actttaatgaagccaaaatttttcattcccattcatggggagttccgaatgctacaccag
catcgcttgctagcagaatctgttggtgtcaaaagaggacatacctttattatgaagaat
ggggatgttgttgatattgaaaatgaaaaggctagacaaacccgaaaaattccgtccgga
gacacatatgtagatggcattggtatcggcgaggtagaaggcattgtcctacgtgatcgt
aaacagctttctgaggatggaatgctagtcatcgttttaacacttagtaaggctgatgga
acatttatttcagagccagatacaatttcacgaggctttgtttatgcaaaagattttgag
gagcttttaacaaaagttaattttcttgtaaaagaaacagtcaatgagctacaagaggaa
ggtagacagcaaattcatgtcttaaagagagaaattaaacgcgctgtgggtcaatatctt
tttacacaaacaaaaagaaaaccaatgatactgccaattattattgatatataa
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