Lysinibacillus pakistanensis: GDS87_23550
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Entry
GDS87_23550 CDS
T06280
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lpak
Lysinibacillus pakistanensis
Pathway
lpak03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lpak00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GDS87_23550 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpak03021
]
GDS87_23550 (rpoC)
03400 DNA repair and recombination proteins [BR:
lpak03400
]
GDS87_23550 (rpoC)
Enzymes [BR:
lpak01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GDS87_23550 (rpoC)
Transcription machinery [BR:
lpak03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GDS87_23550 (rpoC)
DNA repair and recombination proteins [BR:
lpak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GDS87_23550 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QGG53652
LinkDB
All DBs
Position
complement(4875432..4879118)
Genome browser
AA seq
1228 aa
AA seq
DB search
MIDVNEFEYMKIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDM
SPRALEEVIYFASYVVIEPGATNLESKQLLSEKEYRAYREKFGNTFEASMGAEAIKKLLG
KIDLEDETQSLKEELKSAQGQRRTRAIKRLEVVESFRNSGNSPEWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MAIELFKPFVMKELVERGLAHNIKSAKRKIERLNNDVWDVLEDVIREHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLEREDARGEGSVFYGPNEVLIAYDTGHVHLHTRIAIK
ASSLNNPRFSEEQNNKFLLTTVGKVIFNEILPKSFPYINEPTDFNLEQETPDKFFVNLTI
DEETLKELGTDAAYNALDEKGKINAQRTAVLRKYFASVPVVNPFRKKFLGNIIAEVFKRF
HITETSKMLDRMKNLGFKYSTRAGITVGVSDIVVLPDKGEILAEAQEKVDKVQAQFRRGF
ITEDERYDRVISSWSAAKDEIQSKLMKSLEKTNPIFMMSDSGARGNASNFTQLAGMRGLM
ANPAGRIIELPIKSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDV
IVREDDCGTDRGLTIGALMEGTELIEALDERIVGRHTKKTIVHPETGEVILEKDGLIDQD
IARVIIEAGIEEVTIRSAFTCNTKHGVCKKCYGMNLATGEKVEVGEAVGIIAAQSIGEPG
TQLTMRTFHTGGVAGDDITQGLPRIQEIFEARNPKGQSVISEIAGTVSDITEIREGLKEI
TIQGDVETRKYQAPYNARLKVIEGDNVERGQVLTEGSIDPKQLLKVKDVSTVQEYLLKEV
QKVYRMQGVEIGDKHIEVMVRQMLRKVRVIEAGDTDLLPGSLLDIHQFAEANADAVMNGK
NPATCRPVILGITKASLETESFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIGKLV
PAGTGMQRYRQIRIEKDELDSEDLVSAE
NT seq
3687 nt
NT seq
+upstream
nt +downstream
nt
ttgatagacgttaatgaatttgaatatatgaaaattggtttagcttctcctgacaagatt
cgctcttggtcatacggtgaagtaaaaaaaccagaaacaattaactatcgtacattaaaa
ccagaaaaagatggtttattctgtgagcgtattttcggtccaacaaaggactgggaatgt
cattgtggtaagtacaaacgtgtacgctataaaggcgtagtttgtgatcgttgtggtgtt
gaggtaacacgcgctaaagtacgccgtgaacgtatgggccacatcgaattagcggcacca
gtttctcatatctggtacttcaaaggtattcctagccgtatgggtcttattttagatatg
tccccacgtgcattagaagaggtaatttactttgcatcgtatgttgttattgagcctggt
gcaactaacttagaaagcaaacaactactttctgaaaaagaatatcgtgcatatcgcgaa
aaattcggtaacacattcgaggcatctatgggtgcagaagcaattaaaaagctattaggt
aaaattgatcttgaagatgaaacacaatctttaaaagaagagttgaaatctgcacaaggt
caacgtcgcacgcgtgccatcaaacgtctagaagttgttgaatctttccgtaactcaggt
aactcacctgaatggatgattttagatgtactacctgtcattccaccagagcttcgtcca
atggtgcaattagatggtggtcgattcgctacttctgacttaaacgatttatatcgtcgt
gtaatcaaccgtaacaaccgtttaaaacgtttactagatcttggtgctccaagcatcatc
gtacaaaatgaaaaacgtatgttacaagaagctgttgatgctttaattgataacggtcgt
cgtggtcgtcctgtaacaggtccaggtaatcgtccgttaaaatcactttcacatatgttg
aaaggtaaacaaggtcgtttccgtcaaaacttacttggtaaacgtgttgactactctggt
cgttccgttatcgtagtaggtccaaacttaaaaatgtaccaatgtggtctaccaaaagaa
atggctattgagttattcaagccatttgttatgaaagaattagttgaacgtggtcttgct
cataatattaaatctgctaaacgtaaaatcgaacgtttaaacaatgacgtatgggacgtt
ttagaagatgtcattcgtgagcatccagtattactgaaccgtgcaccaacacttcaccgt
cttggtattcaagcattcgaaccaacattagttgaaggccgtgctattcgtcttcaccca
ttggtatgtacagcttacaacgctgacttcgatggtgaccaaatggcggttcacgtacca
ttatcagcagaagcacaagcagaagcgcgtctattaatgcttgctgcacaaaatatcctg
aacccgaaagacgggaaaccagttgtaacaccttctcaggatatggtattaggaaactat
tacttaacacttgagcgtgaagatgctcgaggagaaggctctgttttctatggtccaaat
gaagtgttaattgcatatgatacaggtcatgttcacttgcatactcgtattgccattaaa
gcaagttctttaaacaacccaagattttcagaagaacaaaataataagttcttattaaca
actgttgggaaagtaatctttaacgaaattttgcctaaatcattcccgtatattaatgag
ccaactgatttcaacttagagcaagaaacaccagacaaattctttgttaacttaacaatt
gacgaagaaacgttaaaagagcttgggacagatgctgcttataatgcacttgatgaaaaa
ggcaaaattaatgcacaacgtacagctgtactgcgcaaatactttgcatcagtaccagtt
gtgaacccgttccgtaaaaaattcttaggaaatatcattgccgaagtgtttaaacgtttc
cacattacagaaacatctaaaatgcttgaccgcatgaaaaacctaggatttaaatattca
acacgcgcgggtattactgttggtgtttctgacattgtcgtattaccagataaaggtgaa
attttagcagaggctcaagaaaaagtggataaagttcaggcgcaattccgtcgtggtttc
attacggaagatgagcgttatgaccgcgttatctcaagctggagtgcagcgaaagatgaa
attcaatcgaagctgatgaaatctcttgagaaaacaaatccaatctttatgatgtctgat
tcaggtgcccgtggtaatgcctctaactttacacaattagcaggtatgcgtggtctgatg
gccaacccggctggtcgtatcattgaacttccaatcaaatcttcattccgtgaaggttta
acagtattagagtacttcatttcgacgcatggtgcgcgtaaaggtcttgccgatacagcc
ctaaaaactgccgattcaggttacttaacacgtcgtcttgttgacgttgcacaggatgtt
attgtgcgtgaagatgattgtggtactgaccgtggtttaacaattggtgcattaatggaa
ggcactgaactaatcgaggctctagatgaacgtattgttggtcgtcatacgaagaaaaca
attgtacaccctgaaactggtgaagttattttagaaaaagacggcttaattgaccaagat
attgctcgtgtaattatcgaggctggtatcgaggaagtaactatccgttcagcgttcaca
tgtaatacaaaacatggcgtatgtaaaaaatgttacggcatgaacttagcaacaggtgaa
aaggttgaggttggagaggcagttggtattattgccgctcaatcaatcggtgaaccaggt
acacagttaacaatgcgtacattccatacaggtggggttgccggagacgatattacacaa
ggtcttccacgtatccaagaaatctttgaagcacgtaatccaaaaggtcaatctgttatt
tcagagatcgcaggtactgtttcagatatcacagaaatccgtgaaggcttaaaagaaatt
actattcaaggtgatgtagaaactcgtaagtatcaagcaccttataatgcgcgtctaaaa
gttatcgaaggtgataatgtagagcgtggtcaagttttaacagagggttctatcgatcca
aaacaattgttaaaagtcaaagacgtttcaactgttcaagaatatttattaaaagaagtt
caaaaagtataccgtatgcaaggggtagaaattggagataaacatattgaggtaatggtt
cgccaaatgcttcgtaaagtccgtgtaattgaagctggagatacagatttattaccaggt
tcattactagatatccaccaatttgcagaggcaaatgcagatgctgttatgaatggcaaa
aatcctgcaacttgtcgacctgttatcctgggtattacaaaagcttctcttgaaacagaa
tcattcttatctgccgcatcattccaagaaacaactcgtgtgttaacagatgcagcaatt
aaaggtaaacgtgacgagcttcttggattaaaagagaacgtaattatcggtaaacttgtt
cctgcaggtactggtatgcaacgttaccgtcaaatccgcatcgaaaaagatgagcttgac
tcggaagatttagtttctgctgaataa
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