Leeuwenhoekiella palythoae: LDL79_02340
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Entry
LDL79_02340 CDS
T07563
Name
(GenBank) GIY-YIG nuclease family protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
lpal
Leeuwenhoekiella palythoae
Pathway
lpal03030
DNA replication
lpal03430
Mismatch repair
lpal03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lpal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LDL79_02340
03430 Mismatch repair
LDL79_02340
03440 Homologous recombination
LDL79_02340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lpal03032
]
LDL79_02340
03400 DNA repair and recombination proteins [BR:
lpal03400
]
LDL79_02340
Enzymes [BR:
lpal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LDL79_02340
DNA replication proteins [BR:
lpal03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LDL79_02340
DNA repair and recombination proteins [BR:
lpal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LDL79_02340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
Motif
Other DBs
NCBI-ProteinID:
UBZ10967
LinkDB
All DBs
Position
559251..560681
Genome browser
AA seq
476 aa
AA seq
DB search
MKEAKFAVIDVETTGGGIKGNKITEICIIVLQDGKELDRFTSLVNPGREIPLYIEKLTGI
NDRMVEDAPYFDEIAPQILELTRDCIFVAHNVGFDYNVVRAEFKEAGIDFNRKRLCTVRL
AKKLIPGLFSYSLGNLCTSINIPHYDRHRAQGDTEATVILFQRCLDLDPDYEVIEEFLNR
KSKESYFPPHFKAQDFENLPHKPGVYFFKDKNGKPLYIGKAIDIQKRVLSHFREKSNRKY
ELLQNTHSIDYELTGSELLALLREAELILKYYPKYNKAQKNPSKPYKLTSYHNKQGIEQF
ALHKNKIAPVSWMQFYTREEAIQFMEHLCEEFELCPKYCGLQQGVATCNHYKIHTCSGAC
SGDLSVADYNLRVSKALDYIHQYEQSCLLVEKGRETGEKSFIYLKQGRFSGYGFIDDAAD
FNHHEDFEHYLIPQKSSAYADRIVRRYLATEKQIVRLPLTSVEQHTQNIFENWFVD
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaggccaagtttgcagttattgacgttgagactaccggtggcgggatcaaaggc
aataaaattacagagatctgcatcattgttcttcaggatggtaaagagcttgaccggttc
acttcactcgtaaatccgggaagagaaattccgctgtatattgaaaaactaaccgggatc
aatgaccgtatggttgaggatgcgccttattttgatgaaattgcgccacagatcctagag
cttactcgtgattgtatttttgtcgcacacaatgtaggttttgattataacgtggtgcga
gcagaatttaaagaagccggtattgattttaaccgaaaacgcttgtgcaccgttcggctt
gctaagaaactcataccgggattgttttcatacagtctgggcaatttgtgtacatctata
aacattccacattacgaccggcaccgggcgcaaggagataccgaagctacagtgatctta
tttcaacgctgcctggaccttgatccggattatgaagtcatcgaggaattcctcaaccga
aaatcaaaagagtcgtacttcccgccgcactttaaagcgcaggattttgagaatcttccg
cataaaccgggtgtgtatttctttaaagacaaaaacggaaaaccgctttacatcggtaag
gcgatagacatacaaaagcgggtgctttcgcatttcagagaaaagagtaatcgcaaatat
gaactgctgcaaaatacgcacagtattgactatgaacttaccggcagtgagttactggcg
ctgttgcgggaagctgaactgattttaaaatattaccctaagtacaataaagcacaaaag
aatccgtcgaaaccttataagcttacctcctatcataataaacaagggattgagcagttt
gcgttgcataaaaacaagatcgctccggtgagttggatgcagttttacacccgtgaggag
gccattcagtttatggagcatctttgtgaggaatttgaattatgccctaaatattgtggg
ctgcaacaaggcgtggctacctgcaatcattataaaatacacacgtgcagtggtgcgtgt
tctggtgatcttagtgttgctgattacaatctgcgcgtgtctaaagcgctcgattatatt
caccagtacgagcagtcgtgcctattggtagaaaaaggcagagaaacgggtgagaaatct
tttatctatttaaaacaaggtcggttttcaggatatggttttatagacgatgcagccgat
tttaatcatcacgaggattttgagcattatctgattccgcagaaaagctcggcatatgca
gaccgtattgtgcgtcgctatctcgccacagaaaagcaaattgtacgcttgccgcttact
tcagtagagcagcatacgcagaatatttttgaaaattggtttgtagattaa
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