Leeuwenhoekiella palythoae: LDL79_03140
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Entry
LDL79_03140 CDS
T07563
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lpal
Leeuwenhoekiella palythoae
Pathway
lpal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lpal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LDL79_03140 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpal03021
]
LDL79_03140 (rpoC)
03400 DNA repair and recombination proteins [BR:
lpal03400
]
LDL79_03140 (rpoC)
Enzymes [BR:
lpal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LDL79_03140 (rpoC)
Transcription machinery [BR:
lpal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LDL79_03140 (rpoC)
DNA repair and recombination proteins [BR:
lpal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LDL79_03140 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Biotin_lipoyl
Motif
Other DBs
NCBI-ProteinID:
UBZ11123
LinkDB
All DBs
Position
complement(796346..800647)
Genome browser
AA seq
1433 aa
AA seq
DB search
MARDNDKNAVKRFDQISIGLASPEAILAESRGEVLKPETINYRTHKPERDGLFCERIFGP
VKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPVAHIWYFRSLPNKI
GYLLGLPSKKLDMIIYYERYVVIQPGIAKNEEGEELKKMDFLTEEEYLNVLESIPQENMY
LEDSDPNKFIAKMGAECLVDLLRRIDLNELSYDLRHKANNETSKQRKTEALKRLQVVESL
RDANKNRENLPEWMIMKVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLM
EIKAPEVILRNEKRMLQEAVDSLFDNTRKSSAVKTDSNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPELKLYECGLPKDMAAELYKPFVIRKLIERGIVKTVKSAKKIIDK
KEPVVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDG
DQMAVHLPLGPEAILEAQMLMLASNNILNPANGAPITVPSQDMVLGLYYMTKARKSTPEH
PILGEGITFYSAEEVVIAHNQKRVNINANIKIRTKDFNENGELVYQIIDTTVGRVLFNES
VPEECGYINEVLTKKSLRDVIARILKLTSVPRTAEFLDSIKTLGYTFAFRGGLSFSLGDI
IIPAEKYEMIEEANTQVDGIMSSYNMGLITNSERYNQVIDVWTSTNASLTELSMKRIRED
QQGFNSVFMMLDSGARGSKEQIRQLTGMRGLMAKPKKSNDGGGAIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIVNSEDCGTLRGVEVSALKKNE
EIVETLEARIIGRIALNDVVNPLNSEVIVEAGAEITEELGAEISKAPIESVEVRSPLTCE
ASKGICAKCYGRNLATNKMVQMGEAVGVVAAQSIGEPGTQLTLRTFHVGGIAGNISEENK
VVSKFDGRLEIEDLKTVEGEAPDGSTSQIVISRTSEAKIVDAKTGILLSTNNIPYGSQLF
MKDGDKVAKGDTICTWDPFNGVIISEFAGKIKYENIEQGVTYQVETDEQTGFQEKVISES
RNKRMIPTLHIMGKKDEVIRSYNLPVGAHLMVDDDEKIKIGKILVKIPRKSAKAGDITGG
LPRVTELFEARNPSNPAVVSEIDGVVSFGKIKRGNREIIVESKLGEVKKYLVKLSNQILV
QENDFVRAGMPLSDGSVTPEDILAIKGPSAVQQYLVNEVQEVYRLQGVKINDKHFEVVVR
QMMRKVRIQDPGDTIFLENQLVHKDDFITENDAIFGMKVIEDAGDSETLKAGQIISPREL
RDENSILRREDKNLATARDVVAATATPVLQGITRASLQTKSFISAASFQETTKVLNEAAV
SGKVDTLEGLKENVIVGHRIPAGTGLRRYDKIIVGSKQELEELNAAREEVNFN
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atggcaagagataatgataagaatgcagtaaagagatttgatcaaatctctattggtctt
gcatctcctgaagcgattttggctgaatcgcgcggagaggtgttaaaaccagaaactata
aactaccgtacgcacaagcctgagcgtgatggtttgttctgtgagcgcatctttggtcct
gtaaaggattatgagtgtgcttgtggaaaatataagcgtatacgctataaaggcattgtt
tgtgaccgttgtggtgtagaagttactgagaaaaaagtacgtagagatcgtgttgggcac
atcaatcttgtagtgcctgttgcacacatctggtactttagaagtttgccaaataaaata
gggtatcttttaggtcttccgtctaagaaattagatatgattatctattacgagcgctac
gtagttattcagcctggtatagctaagaatgaagaaggagaggagcttaagaagatggac
ttccttacggaagaagaatacctaaacgttcttgagtctattcctcaagaaaatatgtac
ttagaagatagcgatccaaataagtttatcgctaaaatgggtgcagaatgtctagttgat
ttattaagacgtattgatcttaatgaattgtcttatgatttgcgtcataaagcaaacaac
gagacttcaaaacaacgtaaaaccgaagcattaaagcgtcttcaggttgtagaatctctg
cgtgatgctaataagaatcgcgagaatctacctgagtggatgattatgaaagtggttcct
gtaattccaccagaattacgtccacttgtgccacttgatggtggtcgttttgcgacttca
gatttaaatgacctttaccgtcgtgtgatcattcgtaacaaccgtttgaagcgtttgatg
gaaatcaaagctccagaggtaattttgcgtaatgagaagcgtatgcttcaagaagcggta
gattcactatttgataatactcgtaaatcttcagcggtaaaaaccgactcaaaccgtcct
ttaaaatcactttctgattccttaaaaggtaagcaaggtcgtttccgtcaaaacttactt
ggtaagcgtgtagattattctgcgcgttcggtaattgttgttggaccagaattaaaactt
tatgagtgtggtctgcctaaagatatggcagcagaactttacaagcctttcgtgatcaga
aaattgattgaaagaggaattgtaaaaactgtaaagtctgctaaaaagattatagataag
aaagagccagtagtttgggatatcttagagaatgttcttaaaggacacccggtattgcta
aaccgtgctcctacgcttcaccgtttaggtattcaggcatttcagcctaaacttattgaa
ggtaaggcgattcagcttcacccattagtgtgtacggcatttaacgccgactttgatggt
gaccagatggcggttcacttaccattaggtcctgaagcgatcttagaagcgcaaatgtta
atgcttgcttcaaacaatattcttaaccctgctaacggtgctcctattacagtaccttct
caggatatggtattgggtctatattatatgactaaagcacgtaagagtactcctgagcat
cctattttaggagaaggaattactttttacagtgcagaagaagttgttattgcgcacaac
caaaagcgtgtaaatattaacgctaacattaaaatacgtactaaagatttcaatgagaac
ggtgagttagtttaccaaatcatcgatactacagtggggcgtgtattatttaatgaaagc
gtaccggaagagtgtgggtacatcaacgaagtattgactaaaaagtcacttagagatgtt
atcgcacgtattctaaaattaaccagtgttccgcgtactgctgagttccttgacagtatc
aagacactaggatatactttcgcatttagaggtggattgtcgttctcacttggggatatt
attattcctgctgagaaatacgaaatgatcgaagaggcgaatactcaggtagacggaatt
atgtctagctacaacatgggtcttattacaaactctgaacgttacaaccaggtaattgat
gtttggacatcaactaacgcatcgttgactgaattgtctatgaagcgtatccgtgaggat
cagcaagggtttaactcggtgtttatgatgctagactctggagctcgtggttctaaggag
cagattcgtcagttgaccggtatgcgtggtttgatggctaagcctaaaaaatctaacgat
ggtggtggtgcaattattgaaaacccgattctttctaactttaaagaagggttatcaatt
cttgaatactttatctcaacgcacggtgctcgtaagggtcttgcggatacggcacttaaa
acggcagatgcgggttacttaacacgtcgtctggttgatgtatctcaagatgtaattgta
aacagtgaagattgtggtacattaagaggtgttgaagtttctgcgcttaagaagaatgag
gaaatcgttgaaacacttgaggctcgtatcattggtcgtattgcgttaaacgatgtggtt
aacccgctaaacagtgaagttattgttgaggctggtgcagaaattactgaagaattaggt
gctgagatttctaaagctccaatcgaaagtgttgaagtacgttctccgttaacttgtgaa
gctagtaaaggtatttgtgctaaatgttacggtcgtaacctagcaaccaataaaatggtt
cagatgggtgaggctgttggtgttgttgctgctcagtcaattggtgagccgggtactcag
cttacactacgtaccttccacgttgggggtattgcgggtaacatttctgaggaaaacaaa
gtggtttctaaatttgatggtcgccttgagattgaagatcttaagactgttgaaggggaa
gctcctgatggttcaacttcacaaatcgttatctctcgtacttctgaagcaaaaattgtt
gatgctaaaaccggaatcttattaagtactaataacattccttatggttctcaactcttt
atgaaggatggagacaaagtagcaaaaggagatacgatctgtacttgggatccatttaac
ggtgtgattatttcagaattcgccggtaagatcaagtatgagaatatagagcaaggggtt
acttaccaagtagagactgatgaacaaaccggtttccaagagaaagtaatttcagaatct
cgtaacaaacgaatgattcctaccttacatattatgggtaaaaaagacgaagtaattcgt
tcttataacttacctgtaggtgcacacttgatggtagatgatgatgagaaaataaaaata
ggtaagattcttgttaagattcctcgtaagtctgcaaaagcaggggatattacagggggt
cttccacgtgtaaccgaattatttgaagcacgtaatccttcaaatcctgctgtggtaagt
gagattgatggtgttgtttctttcggtaaaatcaagcgtggtaaccgtgagattatcgtt
gaatctaaacttggtgaggttaagaaatacttagtgaagttatctaaccagattcttgtt
caggaaaatgactttgtgagagctggaatgccactatctgatggttctgtaactccagag
gatatcttagcgattaaaggaccttcagcggttcagcagtacttagtaaatgaagtacaa
gaagtttatcgtttacagggtgtgaaaattaacgacaagcattttgaagtagttgtacgt
caaatgatgcgtaaagttagaattcaagatcctggtgacactattttcttagagaatcaa
ttggttcataaagatgatttcatcactgagaatgatgcaatcttcggaatgaaagttatt
gaagatgcaggtgattctgaaacgcttaaagcaggacaaatcatttcacctcgtgaatta
cgcgatgagaattcaatcttgagaagagaagataaaaatcttgctactgctcgtgatgtt
gtagctgctacggcaactccggtattacagggtattacaagagcttcgcttcagactaaa
tcattcatctcggctgcttccttccaggaaacaactaaagtacttaacgaagctgcggta
agtggtaaggttgatactttagaggggcttaaggaaaatgtaattgtaggtcatagaatt
cctgcaggtacaggtttacgtagatacgataagattatcgtaggaagtaagcaagagctt
gaagaactcaatgctgctcgagaagaggtaaattttaattaa
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integrated database retrieval system
