Leeuwenhoekiella palythoae: LDL79_03715
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Entry
LDL79_03715 CDS
T07563
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lpal
Leeuwenhoekiella palythoae
Pathway
lpal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LDL79_03715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpal03019
]
LDL79_03715
03400 DNA repair and recombination proteins [BR:
lpal03400
]
LDL79_03715
Enzymes [BR:
lpal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LDL79_03715
Messenger RNA biogenesis [BR:
lpal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LDL79_03715
DNA repair and recombination proteins [BR:
lpal03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LDL79_03715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
T4SS-DNA_transf
Motif
Other DBs
NCBI-ProteinID:
UBZ11228
LinkDB
All DBs
Position
complement(917792..919993)
Genome browser
AA seq
733 aa
AA seq
DB search
MSSEEIDLHASLKKYFGFSQFKGLQEDVIKSIIEGKHTFVIMPTGGGKSLCYQLPALIKD
GTAIVVSPLIALMKNQVDALRGISKENGIAHVLNSSLNKGEVKQVKEDITNGVTKLLYVA
PESLTKEENVEFLRSQKISFVAIDEAHCISEWGHDFRPEYRNLRQIIKRIGDDIPIIAVT
ATATPKVQEDIMKNLGMSGANAFKASFNRPNLYYEIRPKTKNVDADIIRFVKQNQGKSGI
IYCLSRKRVEELAQVLQVNGISAVPYHAGLDAKSRVKHQDMFLMEDVDVVVATIAFGMGI
DKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAYYSYKDIEKLEKFMSGKPVAEQ
EIGHALLQEVVAYAETSMSRRKFILHYFGEEFDNETGEGGDLDDNVRNPKKKHEAQDDVV
KLLEVVDKTGAIYKGKELVFTLVGKSNAIISSHKTDTDAYFGCGKDKESSYWKALLRQVL
VAGYLRKDIETYGVIKLTPKGTDFIKNPESFMMTEDHAYDESADAVAVASGAKAGGGTDP
KLVAMLKDLRKKVGKRKGVPPYIVFQDPSLEDMAIKYPTSIEELANVFGVGEGKAKKYGR
EFIELIAAYVEENDILKPDDLVVKSTGSNSGLKLYIIQNVDRKLPLDDIASAKGLEMPEF
VKEMEAIVYSGTKLNINYWIEDILDEDQQEELHEYFLEAETDKIEAALDEFDGDYDEDEL
RLYRIKFISEVAN
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgagttcagaagaaatagacttacacgcgtcccttaaaaaatattttggtttcagccag
tttaagggcttacaggaagatgttataaaaagcattattgaaggaaaacatacttttgtt
ataatgcctaccgggggtggtaaatcactttgttaccagcttccggccttgatcaaagac
ggtacagcaatcgttgtcagtccgttaatcgcattgatgaaaaatcaggttgatgcgctg
cgcggcatttcaaaagaaaacggaatcgctcacgtgttgaattcttctttaaacaaagga
gaggtcaaacaagtgaaagaagatatcaccaacggagtaactaaattactttacgtcgcc
ccggaatcccttactaaagaagagaatgttgagtttttgcgttcgcaaaaaataagtttt
gtcgcgatcgatgaggcgcattgtattagtgaatggggacacgattttagacccgaatac
cgaaatcttcgtcagatcataaaacgtataggcgatgatatcccgatcatagcggtgact
gctacggcgacgcccaaggtgcaggaagatattatgaaaaaccttggcatgtctggagca
aatgcgtttaaggcttcttttaacaggccgaatttatactacgaaattcgcccgaagact
aaaaatgttgatgctgatatcattcggtttgtgaaacaaaatcaagggaaaagcggaatc
atttattgtcttagccgaaaacgcgtagaagagctcgcgcaagtattgcaagtaaacgga
atctctgctgttccctatcacgcggggctagatgctaaaagccgcgttaagcatcaggat
atgttcttgatggaagatgtagacgtggtagtagcaaccatcgcctttgggatggggatt
gataaacctgatgtgcgttttgtgattcatcacgatatcccaaagagtatagaaagttat
tatcaagaaaccggtcgcgccggaagagacggtggcgaagggcattgtttggcgtattac
agctataaggacatcgaaaaacttgagaaatttatgagcggtaagccggttgcggaacaa
gaaatcggtcatgctttattgcaagaagtggtcgcctatgccgaaacatccatgtcgcgt
agaaaatttattcttcattattttggagaagaatttgataatgagacgggagaaggaggt
gacctggatgataatgtgcgtaaccctaagaaaaagcacgaggctcaggatgatgtagtt
aaacttttagaagtggttgataaaacaggcgcgatctacaaaggcaaagaattagtattt
actctggttggaaaatcaaacgcgatcatttcttcgcataaaaccgatactgatgcttat
tttggctgcggaaaagataaggagtcatcttattggaaagctttgctgcgacaggtttta
gttgccgggtatttacgcaaagatatagagacctacggggttattaaattgacgccgaaa
ggaacggattttattaaaaatccggaatcgtttatgatgactgaggatcacgcttatgat
gaaagcgctgatgcagtagccgtcgctagtggtgccaaggccggtggaggaacagatcct
aaactggttgcgatgctcaaagacctgcgtaaaaaagtaggaaaacgcaaaggagtgccg
ccgtatatcgtttttcaagatccttccttagaagatatggcgattaaatatccaacttca
attgaagagttggctaatgtttttggcgttggagaaggaaaagctaaaaagtatggtcgg
gagtttattgaactcatcgcagcttatgtggaagagaacgatattttaaaacctgacgat
cttgtagtgaaatctactggctctaacagcggattgaaattgtatatcattcagaatgta
gatcgaaaacttccacttgatgatatcgcatcagccaaaggacttgaaatgcctgagttt
gtaaaagaaatggaagctattgtctacagcggaaccaaactcaacatcaattattggatc
gaagatattcttgatgaagatcagcaagaagaactacacgaatactttctagaggctgag
actgataaaatcgaagctgcgcttgatgaatttgacggtgattatgatgaagatgagttg
cgtttataccgaattaaattcattagcgaggtggctaattaa
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