Leeuwenhoekiella palythoae: LDL79_07185
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Entry
LDL79_07185 CDS
T07563
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lpal
Leeuwenhoekiella palythoae
Pathway
lpal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LDL79_07185 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpal03019
]
LDL79_07185 (rnr)
03016 Transfer RNA biogenesis [BR:
lpal03016
]
LDL79_07185 (rnr)
Enzymes [BR:
lpal01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LDL79_07185 (rnr)
Messenger RNA biogenesis [BR:
lpal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LDL79_07185 (rnr)
Transfer RNA biogenesis [BR:
lpal03016
]
Prokaryotic type
tRNA degradation factors
LDL79_07185 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
OB_RNR_1st
OB_HELZ2
RNase_II_C_S1
S1_2
DUF4143
WSLR
Motif
Other DBs
NCBI-ProteinID:
UBZ11893
LinkDB
All DBs
Position
complement(1701464..1703668)
Genome browser
AA seq
734 aa
AA seq
DB search
MPNKKRRRRSNIQIGDLTQKILKILKREPGKLFNHKQIAAKLQVDDPNSRNEIVKKLSQL
TAKKHIEEKERGKYSFNATSHYHTGTLDATSRGDGYVVVEGMEQDIYIPNNNMNKALHGD
TVKVYVYKQRRSKKHEGEIVEILERKTDEFVGVVQMQKNFAFINTSAEGKMRTDIFVPKN
KLNGAQDGEKVLVMIEDWPEKADSPFGKVIKILGLPGEHNTEIHSILAQYGLPHDFPEEV
EAYANNIDTSIKEEEIAKRRDMRDVLTFTIDPKDAKDFDDALSFQVLENGNYEVGIHIAD
VSHYVVPGTILDDEAHERATSVYLVDRVVPMLPEILSNNACSLRPNEEKYTFSAVFELDK
SSGKVKKQWFGRTVTYSDARFAYEEAQQIIETREGLIPEDISLTGKSYNVDPAIVNATLE
LDRIAKIMRRQRMKDGAISFDKVEVKFELDQENDPVGVFFKTSKDANKLIEEFMLLANRK
VAEFIGKQSPKKTFVYRIHDEPNDEKLSALQTIAGRFGYKMNLKDRKSTTASLNNLLTDV
VGKKEQNLIDTLAIRTMSKAVYSTDNIGHYGLAFEYYTHFTSPIRRYPDVMVHRLLQHYL
DQGKSASEEEYESKCKHSSDMEYLATSAERDSIKYMQVKFMQDHKDETFLGVISGVTEWG
IYVEIIDNKCEGMIRLRDIKGDHFDFDQEKYAIVGRKTGATITLGDEVYVKVKEADLVKK
HLDFTLVDVKEAIQ
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgccaaataaaaagagaagaagaagatcaaatattcaaatcggtgatctcactcaaaag
attttaaaaattttaaaaagagaacccggtaaattattcaatcataaacaaattgcggct
aaacttcaagtggatgaccccaacagccgtaacgagatcgtaaaaaagctctcacaactt
accgcaaaaaaacatatcgaagagaaagagcgtggcaaatacagctttaacgcgacctct
cattatcatacaggaacactagatgctacttctcgtggagatggttatgttgttgtagaa
ggaatggaacaggatatttatattcctaacaacaacatgaacaaggctttgcacggtgat
acggttaaagtatatgtttacaaacaacgccgaagcaaaaagcacgaaggggagattgta
gaaattttagaacgcaaaacagacgaattcgtaggtgtagtgcagatgcaaaagaacttt
gcttttataaatacttccgcagaaggcaagatgcgtaccgatatttttgttccgaagaat
aaattgaatggagcgcaggatggtgaaaaagtgctcgtaatgattgaagactggccggag
aaagcagattcgccttttggaaaagtgattaaaatactgggcttaccaggagaacataat
acagagattcattcaattttagcgcaatatggcttgccccatgatttccctgaagaggtt
gaagcctatgccaataatattgatacaagcataaaagaagaggaaatcgccaagcgtcgc
gatatgcgggatgtgctcacatttactattgatcctaaagatgcaaaggattttgatgat
gcgttgagttttcaggttttagaaaatggaaactatgaggtaggaattcacattgcagat
gtttcgcattatgttgtaccgggaactatattggatgacgaggcgcatgaacgtgcgact
tcggtttatttggtagatcgtgtggtgcccatgttacctgagattttatctaataacgct
tgttcgttacgacctaatgaagaaaagtatactttttctgcagtttttgaattagacaaa
tcttcgggtaaagttaaaaagcaatggtttgggcgtacagtaacctatagtgatgcacgt
tttgcgtatgaagaagcgcaacaaattatagaaacgagagaaggattaattcctgaggac
atttcgcttaccggaaagtcatataacgtagatcctgctattgtaaatgctactttagaa
ctagacagaatcgcaaaaattatgcgtaggcaacgtatgaaagatggtgcgatttctttt
gataaagtggaagtaaaatttgaactcgatcaagaaaatgatccggttggagttttcttt
aaaacttcaaaagatgctaataagctaattgaagagtttatgcttttagccaatagaaaa
gtggctgagttcataggaaagcaatccccaaagaaaacatttgtttatcgtattcacgac
gaaccaaacgatgagaagctttcagctttgcaaaccatcgcaggtcgttttggctataaa
atgaatcttaaagatagaaaaagtaccaccgcttctttaaataaccttcttactgatgtt
gttggtaaaaaagaacaaaacctgatagacacgcttgctattcgtacgatgagcaaagcg
gtatatagtacagacaatattgggcactacgggttggcttttgaatattatacgcatttt
acttcacccatacgtagatatcctgatgtaatggtacatcgccttttacagcactattta
gatcaaggtaaatctgcttcagaagaagaatatgaatctaaatgtaaacacagtagcgat
atggaatatctggctaccagtgcagagcgtgattctatcaagtatatgcaggtgaagttt
atgcaagatcacaaagatgaaacctttttaggtgtgatttccggagttaccgaatggggt
atttatgtagagatcatagacaataaatgtgaggggatgattcgtttaagagacattaaa
ggcgatcattttgattttgatcaggagaaatacgctattgtaggtcgtaaaaccggagcc
acgatcacgcttggtgacgaggtttatgtaaaagtgaaagaagcagatcttgttaaaaag
caccttgattttactttggttgatgttaaagaggcaattcaataa
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