Leeuwenhoekiella palythoae: LDL79_12210
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Entry
LDL79_12210 CDS
T07563
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
lpal
Leeuwenhoekiella palythoae
Pathway
lpal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LDL79_12210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpal03019
]
LDL79_12210
03016 Transfer RNA biogenesis [BR:
lpal03016
]
LDL79_12210
Enzymes [BR:
lpal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LDL79_12210
Messenger RNA biogenesis [BR:
lpal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LDL79_12210
Transfer RNA biogenesis [BR:
lpal03016
]
Prokaryotic type
tRNA degradation factors
LDL79_12210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
KH_1
S1
KH-I_KHDC4-BBP
AceES-2
Motif
Other DBs
NCBI-ProteinID:
UBZ09560
LinkDB
All DBs
Position
complement(2854592..2856817)
Genome browser
AA seq
741 aa
AA seq
DB search
MIPKTFKEVIDLGDGREISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYKQSDVDFLPL
TVDYREKFAAAGRYPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYHAETQVMIQLMS
HDEDVMPDAMAGLAASAAIQLSDFPFECAISEVRVGRVNGEFIINPSRTQLAESDIDMVI
GASADSVMMVEGEMDEISEEEMTEAIKAAHEAIKVQCEAQIRLAEAFGKKPTREYEPEVE
DAELEKKVYDLTYDKVYEVAKAGSSKHERSTAFDAIKEEVKGTFSEEDLEAFGDLISKYF
YKAEKAAVRDLTLNEGLRLDGRKTTEIRPIWCETDYLPSVHGSSIFTRGETQALATVTLG
TSREANQIDMPSYEGEETFYLHYNFPPFSTGEARPIRGTSRREVGHGNLAQRALKGMIPA
DCPYTVRVVSEILESNGSSSMATVCAGTMAIMDAGVKLKKPVSGIAMGLITDVESGKYAV
LSDILGDEDHLGDMDFKVTGTADGITACQMDIKVKGLSYEILVKALHQARDGRLHILNHL
TDTISEPRGDVKDYAPKMVTTRIANEYIGALIGPGGKVIQELQKETGTTIVINEDPVTEE
GIVEILGTGTEGINAVLAKIDSITFKPKVGESYKVKVIKMLDFGAVVEYLAAPGNEVLLH
VSELAWERTENVSDVVNMGDEFEVKYFGIDSRTRKEKVSRKALLPKPEGYKERAPRNNDN
KDRGSRDNRGRDNRNKDRKRD
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgattccaaagactttcaaagaggtcattgaccttggtgatggtagagagatctctatc
gaaaccggaaaattagcaaaacaggcacatggttctgttgttgttcaatccggtaaatgt
atgttgctttgtacggtagtttcaaactacaagcaaagtgatgttgattttcttccatta
acggtagattatcgtgaaaaatttgctgccgctggccgctatcctggtggtttcttcaaa
agagaagctcgcccaagtgatggtgaagtattaaccatgcgtcttgtagaccgtgtactt
cgcccattgttcccaaaagattatcacgcagaaactcaggttatgattcagttaatgtct
catgacgaagatgtaatgcctgatgcgatggcaggtcttgcagcatctgcagcaattcaa
ctttcagatttcccatttgaatgtgcgatttctgaagtacgtgtgggtcgtgtaaacggt
gagtttatcatcaacccttctcgcacacagttagcagaatctgacatcgatatggttatt
ggggcttcggctgactctgtaatgatggttgaaggtgagatggacgaaatttctgaagaa
gaaatgaccgaagccatcaaagctgctcacgaggctattaaagttcagtgtgaggctcaa
attcgtcttgcggaagcttttggtaaaaaaccaacccgtgagtacgaaccagaagttgaa
gacgcagaacttgagaaaaaagtttacgatttaacgtatgacaaagtgtatgaagtagcc
aaagctggttcttctaaacacgagcgtagcactgcttttgatgccattaaagaagaagta
aaaggaacgttctcagaagaagaccttgaagcgtttggagatttgatctctaagtatttc
tacaaagccgaaaaagctgcggtacgcgatcttactttaaatgaaggtttacgtcttgat
ggtcgtaagactactgagattcgtccaatttggtgtgagactgactatttaccatcagta
cacggttcttcgatctttacacgtggggaaactcaggcgcttgctactgttactttaggt
acttcgagagaggctaatcaaattgatatgccatcttacgaaggtgaagaaacattctac
ctacactacaacttccctcctttctcaaccggtgaagcgcgtcctattcgcggaacgtct
cgtcgtgaggtaggtcacggtaacttagcacaacgtgcattaaaagggatgatcccagca
gattgcccgtataccgtacgtgttgtttcagagattttagaatctaacggttcttcttct
atggctaccgtttgtgcaggtactatggccattatggatgccggtgtaaaacttaagaaa
ccagtttctggtatcgcaatgggtcttatcactgatgttgaaagcggtaaatacgctgta
ctttctgatattcttggtgatgaagatcacttaggtgatatggactttaaagtgaccgga
acagctgatggtatcacggcttgccaaatggacattaaagtaaaaggtctttcttacgaa
attcttgtaaaagcacttcatcaggcacgtgatggtcgtttacacatcttaaaccacctt
acagatacaatttctgaacctcgtggagatgttaaagattacgcgcctaaaatggttact
acacgcatcgctaatgaatacattggtgcgcttataggacctggcggaaaagtaattcaa
gaacttcagaaagaaactggaactacgattgtaatcaatgaagatccagtaaccgaagaa
ggaatagttgaaattctaggtacaggaactgaaggtatcaacgcagttcttgctaaaata
gattcaatcacttttaaaccaaaagttggtgagtcttacaaagtaaaagtaatcaagatg
cttgactttggtgctgttgtagaatatcttgctgctccgggtaatgaagtactacttcac
gtttctgaacttgcttgggaacgtacagagaatgtaagcgacgtggttaatatgggagat
gaatttgaagtaaaatacttcggaatcgattctcgtacacgcaaagaaaaagtttctcgt
aaagcacttctgccaaaaccggaaggttacaaagagcgtgctcctagaaataatgacaac
aaggaccgtggatctcgcgacaatcgaggccgcgataacagaaataaagatcgcaaaaga
gattaa
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