Leeuwenhoekiella palythoae: LDL79_13460
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Entry
LDL79_13460 CDS
T07563
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lpal
Leeuwenhoekiella palythoae
Pathway
lpal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LDL79_13460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpal03019
]
LDL79_13460
Enzymes [BR:
lpal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LDL79_13460
Messenger RNA biogenesis [BR:
lpal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LDL79_13460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_19
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
UBZ09798
LinkDB
All DBs
Position
complement(3146933..3148246)
Genome browser
AA seq
437 aa
AA seq
DB search
MTFKDLGLIDPILKALTDKGYTHPTPIQQQAIPILLKGKDLLGSAQTGTGKTAAFTIPIL
QQIYNGIGAKKGGRKLKALIVTPTRELAIQIDDNVTEYSKYTGIKSTVIFGGVKQASQVL
AMRKGVDVLTATPGRLLDLVKQGFIDLGSIEYLVLDEADQMLDMGFIHDIKKILKLVPHK
RQSLFLSATMPREIVDLSKLILGDFEKVTIAPEKPTAERVDQAVYFVGKRNKANLLKFII
ETEKPQSLLVFSRTKHGANKIVKVLDKAGIQSAAIHGNKSQGARQKALNDFKDGKLHVLV
ATDIAARGIDVSELELVIQYDLPNVPETYVHRIGRTGRAKASGIAISFCATDERPYLKDI
EKLIKQKVHVVTEHPFLSNEASEAGQMKGGDAPEQPKRNNRNRSRNRNKPKGQNNNGPKK
QTARKPNKRFGSKPKTE
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaaagatttaggtcttattgaccccatccttaaggcattgactgacaaagga
tatacccaccctaccccaattcaacagcaagcgatacccatacttttaaaaggaaaagat
cttttgggttctgcgcaaaccggtaccggaaaaaccgcagcttttaccattcctatcctg
caacagatctacaacggtattggtgctaaaaaagggggacgaaagctcaaagcgcttatc
gttacacctacacgtgaactcgccatacaaattgatgataacgtcaccgagtacagcaaa
tacacggggattaaaagtaccgtgatttttgggggtgttaaacaagcctcgcaagttttg
gctatgcgtaaaggcgttgacgtgctcactgctactcccggtcgcttattagatttagta
aaacaagggtttatagatctgggaagcattgaatatctggtgcttgatgaggcagaccag
atgctagatatgggatttattcacgacattaaaaaaattctgaagcttgtaccgcacaaa
cgtcaatctttgttcttatcggcaacaatgcccagagaaatcgttgatctttcaaaacta
attctgggcgattttgaaaaagttaccatcgctccggaaaaacccactgcagaacgtgta
gatcaggcggtatattttgtgggaaaacgtaataaagctaatctgctaaaatttattatt
gaaaccgaaaaacctcagtcgctgttggttttttcgcgtaccaagcacggtgccaataaa
atcgttaaagttctagataaggccggaattcaatcagctgcgattcacggaaataaatca
caaggggcgcgacaaaaagcattgaatgattttaaagatggaaaattgcacgttctcgtc
gctactgatatcgctgctcgcggaattgatgtttctgagctcgagctcgttattcaatat
gatctgcctaatgtgcccgaaacttatgtacaccgcattggtcgtaccggaagagctaaa
gccagcggaattgcaatttcgttctgcgcaactgatgagcgcccatatttaaaggatatt
gaaaaactcatcaaacaaaaagtgcacgtggtaacagagcatccgtttttaagcaatgaa
gcttctgaagcaggccagatgaaaggtggtgatgcgccagagcagcctaaacgcaacaat
cgtaaccgttctagaaaccgcaacaaacctaaaggtcagaacaacaacggaccaaaaaag
cagactgcccgaaaacctaacaaacgttttggcagcaagccaaagactgaataa
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