Leeuwenhoekiella palythoae: LDL79_17045
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Entry
LDL79_17045 CDS
T07563
Name
(GenBank) GIY-YIG nuclease family protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
lpal
Leeuwenhoekiella palythoae
Pathway
lpal03030
DNA replication
lpal03430
Mismatch repair
lpal03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lpal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LDL79_17045
03430 Mismatch repair
LDL79_17045
03440 Homologous recombination
LDL79_17045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lpal03032
]
LDL79_17045
03400 DNA repair and recombination proteins [BR:
lpal03400
]
LDL79_17045
Enzymes [BR:
lpal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LDL79_17045
DNA replication proteins [BR:
lpal03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LDL79_17045
DNA repair and recombination proteins [BR:
lpal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LDL79_17045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
DEDDh_C
DNA_pol_A_exo1
GIY_YIG_2
RNase_H_2
DUF7508
T5orf172
Motif
Other DBs
NCBI-ProteinID:
UBZ10493
LinkDB
All DBs
Position
3967228..3968604
Genome browser
AA seq
458 aa
AA seq
DB search
MYAILDLETTGGKYNEEGVTEVAIYKFDGHQVVDQFISLVNPERPIQAFVVGLTGINNAM
LRNAPKFYEVAKRIIEITQDCIIVAHNAQFDYRILQLEFDRLGYDYQRKSLCTVELAQEL
LPGQESYSLGKLVRNLGIPITDRHRANGDALATVKLFKLLLAKDSKKTIIQEAIKLNPKK
QIDTKLRDIIADLPSSTGVYYMHNANGSVIYIGKSRNIKKRVNQHFTSDNRKSKKIQEEV
EAVSYEETGSELVALLKENEEIKSIKPKHNRALRRTKFKSQLVQFRDEAGYINLRLEKAD
PRKEHITTFATSHSAKQYLEKMLVEYNLCQSKMGLHTTDSNCFNYTIKACDGACVGEESA
ADYNARVTEFISKHSFENKNFLIIDRGRSVDERSVVLIEEGKFKGYGFYNLNFQINNLDI
LERIITPMQDNRDARHLIQSYLRTRKVIKIMELTELEN
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgtatgcaattctcgatctagaaactaccggaggaaaatacaatgaagaaggagttacc
gaggttgctatctacaaatttgacggtcatcaagtagttgatcaatttatcagtctggta
aatcctgagcggcctatacaagcttttgttgtaggacttacgggtataaataacgcgatg
ttgcgcaatgccccaaagttttatgaggtggccaaacgcatcatcgagatcactcaggat
tgtatcattgtagcgcataatgcgcagtttgattaccgcattttacaattagagtttgac
cgactaggatatgattatcagcgcaaaagtttatgtacggtagaactcgcgcaagagttg
cttccggggcaagaaagttacagtttaggtaaactcgtaagaaatttaggcatcccgatt
accgatcgacatcgggctaatggagatgctttagctacggtaaagttgttcaaattactg
ctagcaaaagacagtaaaaagaccattatacaagaagcgatcaaactgaatcctaaaaag
caaattgatacaaagcttcgggatataattgcagacctgcccagcagcaccggcgtttat
tatatgcataacgcaaatggctcggttatttatatcggcaagagccgcaacatcaaaaag
cgggtgaatcagcatttcacaagcgataaccgcaagtctaaaaagattcaagaggaagtt
gaggccgtgagctacgaggagaccggtagcgaacttgtagcgcttcttaaggagaatgag
gagatcaagagcataaaacccaaacataaccgggcgctgcgacgtacaaaatttaaaagt
cagttggttcaattcagggatgaagccgggtatattaaccttcggttggaaaaagcagac
ccgagaaaagagcacatcacgacttttgccaccagtcattctgcaaagcaatatttagaa
aaaatgcttgtggaatataacttgtgccaaagcaaaatggggcttcatactaccgatagc
aattgctttaactataccattaaagcctgtgatggcgcctgcgtgggagaagaatcggca
gcagattataatgccagagttactgagtttatcagcaagcatagttttgaaaataagaac
tttttaatcattgatcgcgggcgttctgttgatgagcgcagtgtggttttaattgaagaa
ggaaaatttaaaggctatggtttttataacttgaactttcagatcaataacttagatatt
ttagagcgcatcatcacaccgatgcaggataaccgcgatgccagacatttaattcaaagt
tatttgcgtacgcgaaaagtgatcaaaattatggaactgactgaactagaaaattaa
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