Leishmania panamensis: LPMP_090720
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Entry
LPMP_090720 CDS
T06539
Name
(RefSeq) cleavage and polyadenylation specificity factor 30 kDa subunit, putative
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
lpan
Leishmania panamensis
Pathway
lpan03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lpan00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
LPMP_090720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpan03021
]
LPMP_090720
03019 Messenger RNA biogenesis [BR:
lpan03019
]
LPMP_090720
Transcription machinery [BR:
lpan03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
LPMP_090720
Messenger RNA biogenesis [BR:
lpan03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
LPMP_090720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_CCCH_4
zf-CCCH
zf-CCCH_2
Torus
zf-CCCH_4
zf-CCHC
zf-CCCH_3
zf-CCHC_2
zf-CCCH_9
Motif
Other DBs
NCBI-GeneID:
22572642
NCBI-ProteinID:
XP_010704310
UniProt:
A0A088RJA0
LinkDB
All DBs
Position
9:complement(267195..268235)
Genome browser
AA seq
346 aa
AA seq
DB search
MFVDDAAGTHFDFEDTLPKEQPRTEKKLEICQDFQRGRCRLGDACPQRHIISAYRTVQTK
VCKHWLRGACVNGDNCLYLHEYDNRYVPQCAFFERVGECTNPECPFLHTKPNESQPECAA
YRRGFCPLGPKCRLRHVKRESACPYYLAGFCPLGPRCPLGHPIQERYDRDAVSKRILAKM
IVERADDPTFNRSATCYRAGCFDPGHLAPDCPGPQHSVLHKALGEIQEPGQPTGALESTG
RGGGGGSHRRCFLCDQEGHTVKDCPMNTHRNQQRGGGSGGPGAPHNSASSAAMGNRRRLR
REGGAGGGGGGGGGGGGSGGGGGGSGGGGGGFGAGGGRRRPGRDHY
NT seq
1041 nt
NT seq
+upstream
nt +downstream
nt
atgttcgtggacgatgccgccgggacgcactttgacttcgaagacacgctgcccaaggag
cagcctcggacagagaagaagctcgaaatctgccaggatttccagcgcggccgctgccgt
cttggcgacgcctgcccgcagcgccacattatctccgcctaccgcaccgtccagacgaag
gtgtgcaagcactggctgcgtggcgcctgcgtgaacggggacaactgtctttatcttcac
gagtacgacaaccgctatgttccacagtgcgccttcttcgagcgcgtgggtgagtgcact
aacccggagtgccctttcctccacacgaagccgaacgagtcacagccggaatgcgccgcg
taccgccgcggcttctgcccgctgggccccaagtgccgcctccgacacgtgaagcgagag
tcggcgtgcccatactacctcgctggcttctgccctctaggtccacgatgtccgctgggg
catcccatccaagagcgctacgaccgcgacgccgtgtcgaagcgcatcctggccaagatg
attgtggagcgcgccgatgacccaaccttcaaccgcagcgcaacttgctatcgggctggc
tgctttgaccccggccatctcgccccggactgtcctggtccgcagcacagcgttttgcac
aaagctcttggcgagattcaagagccggggcaacccactggcgccttggagagcactggg
cgtggcggtggtggaggctctcaccgccgttgcttcttatgtgaccaggagggccacacg
gtgaaagactgtccaatgaacacacaccgtaatcagcagcgcggcggagggagtggcggc
cctggcgccccacacaacagtgccagcagtgctgcaatgggtaaccgacggcgcttgcgg
cgagaaggcggtgccggtggtggtggtggtggcggtggtggtggcggcggtagtggtggt
ggtggcggcggtagtggtggtggtggtggtggtttcggtgccggaggcggtcgccgacgc
cccggtcgtgaccactactaa
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