Leishmania panamensis: LPMP_200370
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Entry
LPMP_200370 CDS
T06539
Name
(RefSeq) DNA-directed RNA polymerase III largest subunit, putative
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
lpan
Leishmania panamensis
Pathway
lpan03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lpan00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LPMP_200370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpan03021
]
LPMP_200370
Enzymes [BR:
lpan01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LPMP_200370
Transcription machinery [BR:
lpan03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
LPMP_200370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
22574244
NCBI-ProteinID:
XP_010698236
UniProt:
A0A088RQM1
LinkDB
All DBs
Position
20:132249..136994
Genome browser
AA seq
1581 aa
AA seq
DB search
MSHAVTTAAQFVQPLLDKPVEVTSIKYSLLSEDMIHRLSVVPCHRVIGTEKNFGVNDPRL
GPSDRLSVCNTCGQCSIECTGHAGHINLEVPVFHLGYFSAVIRVCRTICKRCSNVLLTRE
EMEYYLHRLRSTSHEPQQRAALIKAIQEDAYKTRVCLMCGGLNGTVRRVRPMRVIHEKYL
VELRRGEQANEDPTAFFQEALRSAALHNSEVGSHKEFVHEFLHPQRVKALFEAIPLEQVP
LLGLQPGTSPSSLLISTLLVPPVCVRPRGMSTTSHIREDDLTTQYNEILICSDMMNDGTN
DAARSVETWELLQTRVARLLDAALPGFPSHLRTTECKSYAQRMKGKQGRFRGNLSGKRVD
FSGRSVISPDPNLRIDELAVPLRVARVLTYPQRVFAGNIQLMRRLVRNGPHVHPGALTVY
LSKECSRKSLRNARDREAIAARLSIGDVVERHVMNGDYVLFNRQPSLHRISLMAHRARVL
PFRTFRFNECCCAPYNADFDGDEMNIHVVQTEEARAEAKELLLSSHHIITAKNGEPIIAC
TQDFLTAAYLVTARDALFDRATFTQMVSHWLDAETQFALPIPAILKPAELWTGKQLFELI
LRPTPETQLLLNLEAKTRFYSGAGRHDDPAEGYVAFLDSIFLSGRLDKKLLGGGAKDGLF
ARLYALGGGEQTATCMSRIAQFTARYLQNYGFSLGLGDVSPTPSLSEKKAAVLAVSFDKC
DRLISLAKMGRLIPKPGMSVKQSLEAMLNAELSQVRDACGSAAVQALDAKSNAPLIMVNS
GSKGSALNTAQMMACVGQQTVSGKRIMNAFQDRALPHFPRFAEDPASRGFVASSFYSGLS
PTEFFFHGMAGREGIVDTAVKTAETGYIYRRLSKAMENLSVGYDTSVRSVQGSIVQLRYG
EDGMDPWLMEGSHGTPLNLAQEWLSSRAAYARFRNQIHSVMNERSRRGELAASTDPLLQN
YNKLYEEWHNVSMLPAELETFVHHLLHADEGTLTSCARLMDVEAAICGGAPSSAATGLKL
LKELAQQHGSDRLRSDIQAFFRRKRDELVQLRQELKLPLDTHATVAAAPASPSAKAVRGG
AKRRSSPSDDALPSTTAGPVQAFAESLQVELLPLTRGMLLRFFEDSARRVHRKLCEPGTP
CGAIAAQSVGEPSTQMTLRTFHFAGVASMSITQGVPRLVEIINANKNIATPVITAPILLE
DEFTSIDLASARRTQCQAARAVKGLMERVLLKEITREMVEVVTPRQYYIQIFLDIGLIER
LLLPIDAAVVCQRLYAAAARPMSPLRHLSEACVDMVSRDSLIVKPYEKDPARVHFNIQHL
LTLLPELVVGGIPGVNRVMIADRSEKLLAEGAELLSVMSLPYVDGVRTTCNHVAVVERVL
GIEAARETIVKEITSILQAYSLSIDIRHIYLLADVMTSRGVVLGITRYGIQKMNNNVLTM
ASFERTTEHLYNAAMTEREDVNLSVSECIIIGKPIPLGTSSFNILLDKGSIAPFGSNTGR
MPSSQASANAVATASPSPGKATAAGTHSKKVELTPKEVFLRSSFMAYASAHGAGRHRPLR
GGFSSRPLSAEGVFQLDLFTL
NT seq
4746 nt
NT seq
+upstream
nt +downstream
nt
atgtcacacgctgtcaccacggcggcgcagtttgtgcaaccgctgctggataagccggtg
gaggtgacctcgatcaagtacagccttctctctgaagacatgatccaccgcctctcagtc
gtgccctgccaccgcgtgattgggaccgaaaagaacttcggtgtcaacgatccccgcctt
ggcccgagcgaccgcttgtcggtgtgcaacacctgtggccaatgcagcatagaatgcacg
ggccacgccggtcacatcaacctcgaggtgcccgtcttccacctcggctacttctctgct
gtcattcgagtgtgccggacaatatgcaagcgctgctcgaacgtgctcctcacgcgagag
gagatggagtactatctacaccgcctgcggtccacgtcccatgagccgcagcagcgcgcc
gcccttattaaagccattcaggaggatgcctacaagacgcgcgtgtgccttatgtgtggc
gggctgaacggcacggtgcgacgggtgcgcccaatgcgtgtcatccacgagaagtacctc
gtggagttgcgtcgcggcgagcaggcgaatgaggacccgacggcgttttttcaggaagcg
ttgcgctccgctgcgctgcacaattcggaggtgggctcgcacaaggagttcgtgcacgag
tttttgcacccgcagcgtgttaaagcgctgttcgaggcgattccactggagcaggtaccg
ctgctaggcctgcaacccggtactagcccaagcagccttctcattagcactttgcttgtc
ccgcccgtgtgtgtgcgcccgcgcggtatgtcgacgacgagtcacattcgagaggatgac
ttgacgacgcagtacaacgagattctcatctgctctgacatgatgaacgacggcacaaac
gatgccgcacgtagcgtagagacatgggagcttctgcagacgcgtgtggcgcggttgctg
gatgcggcgctgccggggtttccttcgcacctccgcaccaccgagtgcaagtcctatgca
cagcgcatgaaaggcaagcagggccgttttcggggaaacctcagcggcaaacgtgtcgat
ttttctggacggtcggtcatttcgcctgacccaaaccttcgtattgacgagctcgccgtg
cctctgcgcgtcgcgcgtgtgctgacgtacccgcagcgcgtctttgctggtaacatccag
ctcatgcgccggctcgtgcgcaacggcccgcacgtacaccctggcgccctcacggtttat
ctctcaaaggaatgctcgcgcaaatccctgcgcaacgcacgcgaccgcgaggccattgca
gcgcgcctcagcataggcgacgttgtggagcggcatgtgatgaacggcgactatgtcctc
ttcaaccgtcaaccgtcgcttcaccgcatctcactcatggcacaccgagcacgcgtcttg
ccgttccgtacatttcggttcaacgagtgctgctgcgcgccctacaacgccgacttcgac
ggcgacgagatgaacatccacgttgtgcagacagaggaggcccgcgccgaggcaaaggag
ctgctgctgtcgtcgcaccacattatcaccgccaagaacggcgagcccatcatcgcctgc
acgcaggactttctcaccgctgcctacctcgtgaccgcccgcgacgcccttttcgatcgc
gccaccttcacgcagatggtgtcccactggctggacgccgagacacagtttgcgcttccg
ataccggccatcctgaagccggcggagctgtggaccggcaagcaactcttcgagctcatc
cttcggccgacgccagagacacagctgctgctgaacttggaggcgaaaactcgcttctac
tctggcgctggcaggcacgacgacccagcagaggggtacgtggcattcctcgattccatc
tttctctctggtcgccttgacaagaagctcctgggtggtggcgccaaggacggcctcttt
gcccgcctctacgccctgggcggcggggagcagacggcgacgtgcatgtcgcgtatcgcg
cagttcaccgcccgctaccttcagaactatggcttctctcttgggctcggtgatgtgtca
ccgacgccgtcgctcagcgagaagaaggctgccgtgctagctgtgtctttcgacaagtgt
gaccgtctcatctctcttgccaagatgggccggctcatccccaagcctggaatgagtgtg
aagcagagtctagaggcaatgctgaacgctgagctgtcgcaggtgcgtgatgcgtgcggc
tcggccgccgtgcaagcgctggatgccaagtcaaacgcacctcttatcatggtgaactcc
ggcagcaaaggcagtgccctcaacactgcacagatgatggcgtgcgtgggccagcagacg
gtcagcggtaaacgcatcatgaacgccttccaggaccgagccctgcctcacttcccgcgg
ttcgccgaggaccccgcgtcccgcggcttcgtagccagctccttttactctggcctgtca
ccgacggagtttttcttccatggcatggccggccgcgaggggatcgtcgatacagccgtc
aagaccgcagagacaggctatatctaccgccgtctcagcaaggctatggagaacctaagc
gttggttacgacacctcagtgcgtagcgtacaaggcagcattgtacagctgcgatacggc
gaggacggcatggacccgtggctgatggaggggtcgcacggcacgccgctcaacctcgct
caggaatggctgagtagccgtgctgcctacgcccgctttcgaaatcaaattcactccgtc
atgaacgagagaagccgcaggggcgagctggccgcatcaacggacccgctgctccagaat
tacaacaagctttacgaagaatggcacaatgtgtcgatgctccctgcggagctggaaacg
ttcgtgcatcatcttctgcacgcggatgaggggacgctcacctcttgtgcgcgcctaatg
gacgtggaggcggcgatctgtggtggcgcgccgtcgtccgcggccactggtctgaagctg
ctaaaagagctagcgcagcagcacggaagcgaccgcctgcgcagcgacattcaggcattc
ttccgcaggaagcgcgacgagctggtacagctgcgacaggagctgaagctacccctcgat
acccatgccaccgtggccgctgcacctgcgtcgccgagcgccaaagcagttcgcggcggt
gcaaagcgcagatcgagcccgtccgacgacgcgttgccgtcaaccaccgcaggtccagtg
caggcgtttgcagagtcactgcaagtcgagctgctgccgctcacaagggggatgctgctc
cgctttttcgaggattcagctcgcagggtgcaccgcaagctttgcgagcccggcacgccg
tgcggcgccattgccgctcagtctgtgggtgagccgagcacgcagatgacgctccgcacg
ttccactttgcaggcgtggccagcatgagcatcacgcagggtgtgccgcgccttgtggaa
atcatcaatgcaaacaagaacatcgccactccggtcatcacggcccccattctgttagag
gacgagttcacgtcgatagacctcgcctcagcgaggcgtactcagtgccaagccgcacgc
gctgtgaaaggcctgatggagcgggtgctgttgaaggaaatcacacgcgaaatggtggag
gttgtgacgccgcggcagtattacattcagatcttccttgacatagggctgatcgagcgc
ctgctgctaccgatcgatgcggcggtggtgtgccagcgtctctacgcggcggctgcgcga
ccaatgtcaccgctgcgccatctctccgaggcgtgtgtcgacatggtcagccgcgactcc
ctcatcgtcaagccctacgagaaggacccggcgcgtgtacacttcaacattcagcacctg
ctaactctcttgccggagctcgtggtcggtggcatcccaggcgtcaaccgcgttatgatt
gccgaccgctctgagaagctgctggcggaaggagcggagctcttgtcggtcatgtctctg
ccgtacgtggatggtgttcgcaccacgtgcaaccacgtcgctgttgttgaacgtgttctc
ggcatcgaggctgcccgcgagaccatagtgaaggagattacgagcatcttacaggcctac
tcgctcagcattgatatccggcacatctacctcctggccgacgtcatgacgagccgcggc
gtggtgctcggcattactcggtacggcattcagaagatgaacaacaatgtcctcaccatg
gcgtctttcgagcgcaccacggagcacctgtacaatgcggcgatgacggagagggaggac
gtcaacctcagcgtctctgagtgcatcattattggcaagccgattcctctcggcaccagc
agcttcaacatcctgctcgacaagggcagcattgcgccattcggctccaatacaggacga
atgccatcgtctcaggccagtgccaatgcagtagccacagcgtcaccgtcgcccggcaag
gccacggcggccggcacgcatagtaagaaggtggagctgacgccgaaggaggtattcttg
cggagctctttcatggcttacgcctctgcgcacggggcggggagacatcgacctcttcgc
ggcggcttttcgagtcggccgctctctgccgagggcgtcttccagctggaccttttcacg
ttgtga
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integrated database retrieval system
