Leishmania panamensis: LPMP_202780
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Entry
LPMP_202780 CDS
T06539
Name
(RefSeq) exosome subunit rrp6p-like protein
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
lpan
Leishmania panamensis
Pathway
lpan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPMP_202780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpan03019
]
LPMP_202780
Messenger RNA biogenesis [BR:
lpan03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
LPMP_202780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Motif
Other DBs
NCBI-GeneID:
22574488
NCBI-ProteinID:
XP_010698481
UniProt:
A0A088RRD4
LinkDB
All DBs
Position
20:1237758..1239965
Genome browser
AA seq
735 aa
AA seq
DB search
MPAEAGDVVLPSTKDVVSAVFGSVKEYSKLSGQLPLDDYEYHLAFPGFRKHIRDDSETLV
ALMDACTQLLPKRRRTSLCSEEDPRSGAVHLVETQRTAVMEAIDSLLENVDSLLDEVKGR
KLDAQEQLSVTFGSELMALQHRNGVAGPAEASSGRGGLVSLAHIRRPQLLFDTPPDNSLA
PFVPHYCDASGQYHLGVAGQHPFEGVIRAFVIPESQLLPREEVPPMPLDTCPLSFVDTPA
AMQAMVAKLLLSSEIAVDLEHHDFYSYQGITCLMQISTREEDFIVDCLQLRSLMGALAPV
FLNPLILKVLHGAREDIRWLQKDFSLYLVNFFDTGVALQTLHMPYSLAFAVDHFCQVKLN
KKFQTADWRVRPLSAEMVHYARQDTHFLLYVYDRLKALLLNSEGRAIVGNLLVHVYKESK
QLSLQLYEKPHVVPEETYKIALGRSLSGLNKVQEKVARDVFNWRDSAAREVDDSPTAVLH
LSSVLAIASKLPATAKELLRCCAPPTAVVRDNVALLVDFVKDAVANGKDDVAAKAHTMRD
NGESVDDWNDGAMTAAKKEWEFYRSLCPTGVHRPMTGTLPSLASVVKTVAPAEVSQAERS
ALLSHTTPSQWFTAMQALSRVLATRPPQRVELPGADVFVARQTATAADQAAKDAEEKKTE
SGAVSNSCSSSVSELAQEADEEELTMGATTAQSAEDQSAPVIPVDKRAFSIKQKYGIGGK
GKAKKTGKGTSWQVK
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgccagccgaagctggtgatgttgtacttccttcgacgaaggatgtcgtttccgctgtc
tttgggtctgtgaaagagtacagtaagctctctgggcaacttccactggatgactacgag
taccacctcgcctttccgggattccgcaagcatattcgcgatgatagtgaaacgcttgtt
gcactgatggatgcatgcacacagctccttccaaagcggcggcgtacaagtctctgctcg
gaagaggatccgcgcagtggtgcggtacacctcgttgagacacagcgcactgctgttatg
gaggcaatcgactcgcttctagaaaacgtcgactctcttctcgacgaggtgaaggggcgt
aagctcgacgcacaggagcagctctccgtcacgtttgggtccgaactgatggctttgcag
catcgcaacggggttgctggtcctgctgaagcaagtagtgggcgcggaggtctggtatct
ctggcccacatccggcgcccgcagttgttgttcgacacccctccggacaactcgttagcg
ccgtttgtgccgcactactgcgacgcatcggggcagtatcaccttggggtggctgggcag
cacccttttgagggggtgatcagagcctttgtcatcccagagtcccagctgctcccgcgg
gaagaggtaccgccgatgccactggacacctgtccgctctcttttgtggatacccccgcg
gcgatgcaagcgatggtcgcgaagctgttgttgtcaagcgagatcgctgtggacttggag
caccacgacttctacagctatcagggcattacttgcctcatgcaaatcagcactcgcgag
gaggacttcattgtcgactgcctgcagctgcgctctttgatgggggctttagcgccggtt
tttctgaacccgttgattcttaaagtgctgcacggcgcgcgcgaagatattcggtggctg
cagaaggatttctctctctacctggtgaacttcttcgacactggagtggcgctacaaaca
ctgcacatgccatacagcctcgcctttgccgtcgaccacttctgccaggtgaagttgaac
aagaagttccagacggccgactggcgtgtaaggccgctgtccgcagagatggtgcactac
gcacggcaagacacacactttctcctctacgtgtatgaccgattgaaggcactactgttg
aacagcgagggccgcgccattgttggtaatctgctcgtgcacgtctacaaagagagcaaa
cagctctccctacagctctacgagaagccacacgtggtgcctgaagagacgtacaagatt
gcgctgggccgcagccttagtggactgaacaaggtgcaggagaaggttgcgcgcgacgta
ttcaactggagggactcagcagcacgtgaggtggatgattcacccacggctgtgctgcac
ctgtcctcggtgttggccattgcctctaagctcccagcaacagcgaaggagctgcttcgt
tgctgcgcgccaccaacggcggtcgtgcgcgacaacgtcgccctccttgtggacttcgtt
aaggatgccgttgcgaatggcaaggatgacgtggcggcgaaggcgcacaccatgcgagac
aatggagaatcagtcgacgactggaacgacggtgcgatgacagcggcaaaaaaggagtgg
gaattctatcgctccctctgccccacaggcgtgcaccgccccatgacaggaactctgcct
tccttggccagtgtggttaagacggtggcaccagccgaggtctctcaggcggaacgctcc
gcccttctctcgcacacgacgccgtcacagtggttcaccgccatgcaagccctgtctcgt
gttctcgctactcgtccaccgcagcgcgtcgagcttccgggcgccgatgtgtttgtcgcc
cgccagacagctacagcagcggaccaagctgcgaaggatgctgaagagaaaaagacagag
agcggcgcagtctctaacagctgcagctcgagcgtcagcgagctggctcaggaagccgac
gaagaggagttgaccatgggcgccaccaccgcacagagtgccgaggaccaatcggcaccc
gtcataccggtcgacaaacgggccttctctatcaagcagaagtacggcatcggaggcaag
ggaaaggctaaaaagactggcaaaggaacgtcatggcaggtgaagtag
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