Leishmania panamensis: LPMP_250180
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Entry
LPMP_250180 CDS
T06539
Name
(RefSeq) cleavage and polyadenylation specificity factor, putative
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
lpan
Leishmania panamensis
Pathway
lpan03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lpan00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
LPMP_250180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpan03019
]
LPMP_250180
Messenger RNA biogenesis [BR:
lpan03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
LPMP_250180
U7-dependent histone pre-mRNA processing factors
LPMP_250180
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Lactamase_B
Lactamase_B_2
Beta-Casp
Motif
Other DBs
NCBI-GeneID:
22575666
NCBI-ProteinID:
XP_010699590
UniProt:
A0A088RSD4
LinkDB
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Position
25:complement(44334..46826)
Genome browser
AA seq
830 aa
AA seq
DB search
MLRASAGSIRLTSVYECTTPNAPYAYLVEIDGVRILFDCGWNEEFDTSFLAKLKPHLATV
HAVILSSPHITACGALPFVLTHIAPGTFVAAAGATSKIGVHSVLHSFLYQYPNSHTFTLA
DGEGFTMTVDSIYHSFRSLREPYGGKVTVKNEDVEVNCFAVFAGRMLGGYSWTIKYQIDE
LFYCPDFSVKPSYALKSFDVPTTANIVLVSSFPFHMTVSNRTTKYEEQLKSLFKELQHTL
RGGSDVLVPVNVAGRGLEVLNILVHLLAEQGGDKYKVVLVAAQAQELLDKAGTMTEALQD
YLILDDKRLFANVLTCRSAEEVLPIQGPKICVADGVSLDFGPSAELLEYFVKGNRDGADH
LIVLTEPPLPGTNATVVTAAGDGERLHFQITRRSRLSGEELEEYYIDLEHDVEQRRRELE
AQSTFQVVPDDEEDAANTKGDADDDDDDDGEWVAAAATSHGGAAEKPSTISGTTAATTAG
AGDAAAAPAKTKAAATTPGLVLPPSLHYHSKHLSFPVLETASTLSAAALKRIDVAYGLPV
SEEEQVVLQKRAPARQHSDAGPEALQVENDAQRLANIPSKVSRVAVEVTRRCRVVLSDLS
GYPDALTMKSILKTKWTFAKKMVGLRGNAEDGRAFQHFCRADKSMKCGSTVFSVTSSGVP
LELATHVYSYAVQLESSLARSLSRGLRRVRETKSKSTWEVGWVNGELSGVRAEADLVEPE
VQRCRSDRASYFLTAVTADKSQACAAQREQQGLQSGSFFVGDMDLRRLRETSRQESGLYS
EFHKKAPLLVFDEGVCVRKGADGTVTISSIATPALFDLRRTVYRQYSQVL
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgctacgcgcctccgcgggcagtattcggctcacttcggtgtacgagtgcactaccccc
aatgcaccctatgcctatctcgttgagatcgacggggtgcgtatcctcttcgactgcgga
tggaatgaggagttcgacacgtccttcctcgctaagctgaagccacacctggcaactgtg
catgccgtgatcctgtcgagtccgcacatcaccgcctgcggcgcccttccctttgtcctc
acccacatcgctcccggcacttttgtggcggcggccggcgccacatcgaagatcggcgtg
cacagtgtcttgcactccttcttgtatcagtacccaaactcgcacaccttcaccctcgcg
gatggggaggggttcacgatgacggtggattccatctaccacagctttcgctccctccgc
gagccgtatggcggtaaggtcaccgtgaagaatgaggatgttgaggtcaattgcttcgcc
gtctttgctggccgcatgctgggtggctacagctggacaatcaagtaccaaatcgatgag
ctcttctactgcccagacttctcggtgaagccgtcgtatgcgctgaagtcgtttgacgtg
ccgacaacggcgaacatcgtgcttgtgagcagctttccctttcatatgaccgtctcaaat
cggacgacgaagtacgaagaacaactgaagagccttttcaaagaactccagcacaccctg
cgcggtggcagcgacgttctcgtgcctgttaacgtcgcaggtcgtggactggaggtgctg
aacatccttgtgcacctcttggcagagcagggcggcgacaagtacaaggttgttctggtg
gctgcccaggcccaggagctgctcgacaaggcaggcaccatgaccgaggcgctgcaggat
tacttgattctcgatgataagcgcctctttgcgaatgtcctcacgtgccgcagcgcagag
gaggtgctcccgatccagggccccaagatctgtgtcgcggacggggtctctctggatttc
ggaccctccgcggaactactcgagtactttgtgaagggcaaccgcgacggcgccgatcac
ctcatcgtcttgacggagccgccgttgccggggacgaacgcgaccgtggtgaccgctgct
ggggacggcgagcgtctgcactttcaaatcacgcgtcgtagtcgcctgagtggggaggag
ctggaggagtactatattgacctggagcacgacgtggagcagcgccggcgtgagttggaa
gcgcaaagcaccttccaggttgtgccagacgacgaggaggacgctgccaataccaaggga
gatgcggacgacgatgacgacgacgatggcgaatgggtggcggcggccgcgacgagtcat
gggggagcagctgagaagccttccaccatcagtggcaccacggctgccaccacagctggc
gcaggcgatgctgccgcggccccagcgaagacgaaggcggcggcgacaacccctggcttg
gtgttgccgccgtcgttacactaccactcgaagcatctgagctttcccgtgctggagaca
gcgagcacgctgagcgcggcggcactgaagcgcatcgatgttgcgtatgggcttcctgtt
agcgaggaggagcaggtcgtgctgcagaagcgcgcgcctgctcggcagcacagcgatgcg
gggccagaggcgctgcaggtggagaacgatgcacagcggctcgccaacatcccatccaag
gtgtcgcgcgttgcggtggaggtgacacggcgctgccgcgttgtcctctccgacctcagc
ggctatccagacgctctcaccatgaagagcatcctgaagacaaagtggacgtttgcaaag
aagatggtcggacttcgcggcaacgccgaggatggacgggcgtttcagcacttttgccgc
gccgataagtccatgaagtgcgggtcgactgtcttcagtgtcacgtcgtccggcgtaccg
ctggagttggcgacgcacgtgtactcgtatgcggtgcagctagagtcgagtctcgcacgt
agcctgtcgcgtggcctacgccgcgtccgcgagaccaagtcaaagagtacatgggaggtt
gggtgggtcaatggtgagctctccggcgtgcgtgctgaagccgaccttgtggaaccagag
gtgcagcgctgtcgctccgaccgcgcctcttacttcctcactgctgtcacagcggacaag
tcgcaggcgtgtgcagcacagcgggaacagcaagggctgcagagtggctccttctttgtc
ggcgacatggaccttcgccgcctgcgcgagacttcgcgccaggagagtgggctgtacagc
gagtttcacaagaaagcgcccttgctggtcttcgatgaaggcgtgtgtgtccgaaaaggc
gctgacggcaccgtcaccatctcctccattgccaccccggcactgtttgatctgcgccgc
accgtctatcgccagtactcgcaggtattgtag
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