Leishmania panamensis: LPMP_250440
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Entry
LPMP_250440 CDS
T06539
Name
(RefSeq) hypothetical protein
KO
K14555
U3 small nucleolar RNA-associated protein 13
Organism
lpan
Leishmania panamensis
Pathway
lpan03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
lpan00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
LPMP_250440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lpan03009
]
LPMP_250440
Ribosome biogenesis [BR:
lpan03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
LPMP_250440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Utp13
Beta-prop_EML
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
EIF3I
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
ANAPC4_WD40
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_SCAP
Beta-prop_Nup120_160
Beta-prop_IP5PC_F
Beta-prop_DCAF12
Utp12
Beta-prop_IFT122_2nd
UTP15_C
HCV_NS5a_1b
Beta-prop_IFT140_2nd
Motif
Other DBs
NCBI-GeneID:
22575692
NCBI-ProteinID:
XP_010699616
UniProt:
A0A088RUG0
LinkDB
All DBs
Position
25:complement(127222..130275)
Genome browser
AA seq
1017 aa
AA seq
DB search
MEGKNCFRTRWTQEPIFSGGALASLALPVPSPATSSTLFRSGAVEECLVMACGDTVNVVR
TASGEVLCRYTLPVEDVILHIDAVTVHESAGDDNEDAAAAEDGFAQVKNNAGAANRSTTT
SESSRKKVRAGKTAKLEEEDARHVMQAEKRGAVASARAPSRGASTSHDERELAAPPGSYV
AVGTRSLQVYVLRVDSRVELPILPSLSLSAEHGAVAEAASEEGSAAEAEGAKGDVVRAET
ATEVLVQYSIKLERNWTAAQHAISVVHFSQSGVYLISGATDGTVKVWNVFHHHLTHNLVC
AHNSLVQSVCLDPSEAYLAVGSFEGHVTVFDFVAKRMVAEGRPHVQAVESMTFNDALTHV
YSIARDRRLALNKMMCSEGHKSTGLKEVRAIVVKEHVSSATFESAEMLHVGAMDGVVTTY
RVSESEAIQVVRRLPKAPAADAEDSAEEAFVRSLLVAGKPKGTGMRWLHGFVVHDTLPAS
ETSSLYVGDAGFNIQFLAPATAERSQYEVIRTIVGFLDQLLDVKLFPEASPLHRAVVTNS
KDVRLYASDGCVSSKTLRGHSDVVLCCAVSSNGAWIATGAKDKEVRVWSSEGCETILRGV
GGHAAEVTSLSFNGRQTDTYMLLFSVSSDENLRMWDVGVPLADRALAERPRSRVVEIKHR
SGVNAAHTGPIYTVAVAPNDQYVATGGKDKSVNVWNITGKKIYREASLKGHRRGISSLAF
SPVDRVLASASNDGSVRLWSLVSLTCLKAMQVDRTSVLQLSFFNNGTQIVTGNAEGVLRV
WAIASSESVWSAEAHTEKIWALAVEERAALGETIFYSGAADGVLIATEDYTAEEVTRVKE
DRHNMIQQEQALANALRKGEFSEAFMLALRLSHPRHLRQVLVRWCAKDARQCENALRGEL
LPALDAEQMTRLLQYTREWITNSRHCMVATLVLYTLISSRHFEAVAQVPSMSSLIEPLLA
HTRKHSQRQHDLLRRTYYIDYVIRGLVPNVLTSLPPFVHHDDSQKEKPPLAKRVRAE
NT seq
3054 nt
NT seq
+upstream
nt +downstream
nt
atggaggggaaaaactgcttccgcacgcgatggacgcaggagccgatcttcagtggcggc
gcgctggcctctttggcacttccagtgccaagccccgctacgtcgtcgacacttttcagg
tcgggcgctgtggaggagtgcctcgtgatggcgtgcggcgacaccgtgaacgttgtgcgt
acggcgagcggcgaggtgttgtgcaggtacacgttgcccgtagaggacgtgattcttcac
attgacgccgttacagtgcacgagtctgcgggcgacgacaacgaagacgccgctgccgca
gaggacggattcgcgcaggttaagaacaacgccggcgcagcgaacaggtcgaccacgaca
agtgagtcgtccaggaagaaggtgagggctgggaagacagccaagctggaggaggaggac
gcgaggcatgttatgcaagcggagaagaggggagcagtggcatccgcgagggcgccttcg
cgcggcgcttccacctctcacgacgagagggaactcgctgcgccacctggcagctacgtt
gcggttggcacgcgttctctgcaggtctacgtacttcgcgtcgactctcgagttgagttg
cccatcttgccctcgctctctctttcagcggaacacggcgctgttgccgaggccgcttcc
gaggagggcagcgctgcggaggcggagggtgcgaagggggatgtagtacgcgcagaaacc
gctacggaggtcctcgtgcagtactcgatcaagttggagcggaactggacggcagcgcag
cacgccatctcggtcgtgcacttctcccagagtggggtctaccttatctcaggtgccacg
gatggcactgtgaaggtgtggaacgtctttcaccatcacctcacccacaacttggtgtgt
gcccacaactcgctcgtgcagagcgtctgcctcgaccccagcgaggcctacctcgccgtc
ggctccttcgaggggcacgtcactgttttcgactttgtcgcgaagcggatggtagcggaa
gggcggccccacgtacaggcggtcgagtccatgaccttcaatgacgcgctcacacacgtc
tattccatcgccagagatcgccgtctcgctctcaacaagatgatgtgtagcgagggacac
aagtcgacggggctgaaggaggtgcgtgcgattgtggtgaaggagcacgtgtcgagcgcc
accttcgagagcgccgagatgcttcacgttggtgcgatggacggcgtggtcaccacctac
cgcgttagtgagagcgaggccatacaggttgtgcgtcggcttccaaaggcgccggccgcg
gatgccgaggacagcgccgaggaggcgtttgtgcgctctctcctggtggcgggcaagcca
aagggcacgggcatgcgctggttacatggctttgttgtgcacgacacgctgcccgcgtcg
gaaacctcctcgctgtatgttggtgacgcggggtttaacattcagttcctcgctcccgcc
acagcggagcgcagtcagtacgaggtcattcgcaccatcgttggcttcctggatcagttg
ctcgacgtgaagctgttccccgaggcctcaccgctgcaccgcgctgtagtgaccaatagc
aaggatgtgcgcctgtacgcctcggacgggtgcgtctcctcgaagacgctgcgcggccac
agcgacgtagtgctctgctgcgccgttagcagtaacggggcgtggatcgccaccggagcc
aaggacaaggaggtgcgcgtgtggtcgagcgagggatgtgagaccattttgcgcggcgtt
ggcgggcacgcagcggaggtgacgtcgctctccttcaatgggcggcagacggacacctac
atgctgctcttctcggtctccagcgacgagaatctgcgcatgtgggacgtcggtgttccc
ttggcggaccgtgcgctggcagagcggccacggtcacgagtggtggagataaagcacagg
agtggcgtgaatgcggcccacaccggccccatctacaccgtggctgttgcgcccaacgac
cagtacgtggcgacaggcggcaaggataaatcggtgaatgtgtggaacataacgggcaag
aaaatctaccgcgaggcctccttgaaggggcaccggcgcggcatctcgtccctcgccttc
tcgccggtcgatcgcgttctggcatcggcctcgaatgacgggtcggtgcgactgtggtcg
ctcgtgtcgctgacgtgcctgaaggcaatgcaggtagaccgcacgtcggtgctgcagctg
agcttcttcaacaacggaacgcagatcgtgacgggcaacgcagagggcgtgctgcgtgtg
tgggctatcgcgtcctcggagtcggtctggtcggcggaggcgcacacggagaagatatgg
gcattggcagtcgaggagcgcgccgcattgggcgagacgatcttctactccggcgccgcc
gacggcgttttgattgcgacggaggactacaccgccgaggaggtgacccgcgtcaaggag
gaccggcacaacatgatccaacaggagcaggcgcttgccaacgctcttcgcaagggggag
ttctcagaggcatttatgctggctctgcgactgagtcacccgcgccatctccgccaggtg
ctggtgcgttggtgtgccaaggacgcgcggcaatgcgagaacgcgcttcgtggggagctt
ctgcccgcccttgacgcggagcagatgactcggctgctgcagtacacgcgagaatggatc
acgaacagccgccactgcatggtcgctactctggtgctctacacactcatttcctcacgc
cactttgaggccgtcgcgcaggtgccgtcgatgtcgtcactgatcgagccgctgctcgcc
cacacgcgcaagcacagccaacgccagcacgacctgcttcgacggacgtactacattgac
tatgtcatccgcggtcttgtcccgaacgtgctgacgtcgctgcctccgttcgtgcatcac
gatgacagccaaaaggagaagccgccactcgccaagcgagtgcgcgccgagtga
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