Leishmania panamensis: LPMP_250630
Help
Entry
LPMP_250630 CDS
T06539
Name
(RefSeq) RNA polymerase I second largest subunit, putative
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
lpan
Leishmania panamensis
Pathway
lpan03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lpan00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LPMP_250630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpan03021
]
LPMP_250630
Enzymes [BR:
lpan01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LPMP_250630
Transcription machinery [BR:
lpan03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
LPMP_250630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpa2_4
RNA_pol_Rpb2_1
DUF883
Motif
Other DBs
NCBI-GeneID:
22575711
NCBI-ProteinID:
XP_010699634
UniProt:
A0A088RS14
LinkDB
All DBs
Position
25:complement(210395..215242)
Genome browser
AA seq
1615 aa
AA seq
DB search
MSSRSSHYSAKSLSSSAGESMVTSHSTGSSSRHRRTGTVGIHESRAPPMKMTATERLQHV
RNSITRLKYVCERQHHTAALDQAAEASVMLFFERLRKKLPRIEFSRSHIGTPETGGPRHL
QYILKEVRQLMSTAQEVVRDTANASATATAIYEGMQHHHVQEAMAELEELSVLLAEHPSE
QPSRVNIDLLADLVALHIDEFDAFMALRVEAFVKEMQNEGAFFTGPVMTDASQKATPIGV
CSAVLLDVAVGVRPGHSASIVLDHARHNIKKVENRLHAADIALQDCQPVGKATAVEQQRE
QAEVQRRELTIMKERISYALRELDCVQRTWREEEQSIFTRATSGSHDLVVLMQTKHLREA
EVVEEVQLLHDKTIHACLPFATPQYHRRYGETYGQPCHIRLGFHFLPDENTAAELAAASG
STSAASPSSLILRTLSTEYFALMRQLRVAPADYDTYDYLVPSKEQFWVNFASFPEMVKGA
RCALRNVDARLDHFRALEEQKEVGGYFIMNGGERILRALLMQRCNVPINIFRERFATQGP
HFSAKAVVIRCKRPSGLTAQNYFYYTTQGEVIFSFARKVVWHLPVPLLLSAMSTQSVSAV
ELQRLLTIGMPEGSHAARVEALLQHHRGKPYGDLRHFTDYITVLGRMYREYHQNSSTFHF
LPLYAKGSTCQHDAWYGMFMLRRHILPHLNSCDAATPDLAPGATAQMLVAWLSPALLAEL
DRKFDAMIAITRQLYLFIDGAVEHQGNDVPAYQELFTVSQVLMGAFEVCLNRYMRGFVYR
LARHLPAALFHRILSLRTLPPVDAEDIVRQVRQFAEFCGRHGGSDPLDQLRRLLVTGNLN
LDREEDFYCPQTSGWVVMAEHLNFYRFFEQLRCVHRGKTIADMRSSEVRKYPCEAYGFIC
MVQSPDGEDCGVLNHLSISMISSNSPDVAMTAQLREMVCKAVPNVRSRATRSSVVDQLCE
TVPVWMEGELVGYLSPTDAMKAAATLRQLKALTLRSQVHVSGIVRRKDASPLHTLEVVYV
APGSRDPAGLYVFYDCGRLMRPVQLLESSVRTGATHLPFPLVFIGTWEQSWADVAAVPSD
PLDAVVQLNRKYEYMEQNGTNFISLTSATIPFFEHNCSPRNLFQCGLSKQSSGTQLQALA
WRKEAKLFRTYCPQRYISRTLPMDYYGLDDVNLGVNAVIAILAYTGYDMDDAVIINTTTT
QRGMLTAGVTVAKIVTAAGRGSDKDDVFVFHNLLSTGERFTAQLEANGLPPKRANASLEA
FSFDRDHKYPGLRDNSDVYCCAKRVERVDPFTNKSIYEYTRHHATKWRHFDKGEDAWVQQ
VIPLVYSGPDPTSVLMIFRIPRPPAVGDKFSSRHGQKGTLPLHISSHDLPFSTTSGITPD
VIINPHAFPSRMTVGMMLEIMTAKVGAIEGRFIDNSAWSTVDDQPRVAELIGDALVKAGY
NRYGREHLIDGISGEEMKADVFMGICGYQRLRHMVSDKWQARARTDAHTYRAVTKTGQPV
KGRKRHGGVRVGEMERDGLLSHGISEVVVDRLLHVSDKTKAFICPRCGSLLSLYERHATE
YGTWRTCRFCGAGADESTDSIAMVEIPQVLRLWAAELTSIGIRVVLKTSEHSDFV
NT seq
4848 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtctcgctcatcacactacagcgccaagtcgctctcctcctcagcgggggagtcg
atggtgacgagccacagcactgggtcctcgagccgccaccgtcgcactggcaccgtcggt
attcatgagtcacgcgcgccacccatgaaaatgaccgcgacagagcgcctgcagcacgtc
cgaaactccattacgcggctcaagtacgtttgtgagaggcaacaccacaccgccgcgctt
gatcaggcggctgaggcctccgtcatgttgttcttcgaacggctccgcaagaagctgccg
aggatcgagttcagccgtagccatatcggcaccccagagaccggcggcccgcgacatctg
cagtacattctgaaagaggtgaggcaactcatgagtacagcgcaggaggtggtgcgcgac
accgcgaacgcctccgcgacggctactgccatttatgagggcatgcagcaccatcatgtg
caggaggccatggcggagctggaggagctgtccgtcctcctggcagagcaccccagcgag
cagccgagtcgcgttaacatcgatctcttggcggaccttgtcgcgctccacatcgacgag
ttcgacgccttcatggcgctgcgcgtcgaggcgttcgtgaaggaaatgcaaaacgagggc
gccttcttcaccggcccggtcatgacggatgcctctcagaaggctacaccgatcggcgtg
tgctcggcggtgcttctggacgtcgcggttggcgtgcggccagggcactccgctagcatt
gtgctcgaccatgcgcggcataacatcaaaaaggttgagaaccgtctgcatgctgcagac
attgcgctgcaagactgccagccagtaggcaaggctacggctgtagagcagcaaagagag
caggcggaggtgcagcgtcgcgagctcacgatcatgaaggagcgcatcagttatgccctt
cgcgagttggactgcgttcagcgaacatggcgggaggaggagcagagcatcttcactcgt
gccacctccggtagccacgacctggtggtgcttatgcagacaaaacacctgcgcgaggcg
gaggtggtcgaggaggtacagctgctgcacgacaagacaattcacgcttgtctgcccttc
gccaccccgcagtatcaccgccgctacggcgagacgtacggccagccttgccacatccgc
ctcggcttccacttcctgccggacgagaacactgcagccgagctggccgccgcttctgga
tcgaccagcgccgcatcgccgtcctcgctcatactgcgcaccctctccacggagtacttt
gcgctgatgcgtcagctgcgcgtcgctcctgccgactacgacacctacgactaccttgtg
ccgagcaaggagcagttttgggtgaactttgcaagcttcccggagatggtgaagggagct
cgctgcgcgctgcgtaacgtcgacgcccgcctcgaccactttcgcgcgctggaggagcag
aaggaggtgggcggctacttcatcatgaacggcggtgagcgcattctgcgtgcgttgctc
atgcagcgctgcaatgttcccatcaatatcttccgtgagcggttcgccacccagggccca
cacttctccgccaaggccgtcgtcattcgctgcaagcggccaagcgggctgacggcgcag
aactacttctactacaccactcagggagaggtgatcttctcctttgcgcgaaaggtggtg
tggcatctgccggtgccgctgcttctcagcgctatgagtacgcagagcgtgtcggcggtg
gagctgcagcggctgctgacaattggcatgccagagggcagccacgccgcccgtgtcgag
gcgctcctccagcaccaccgcggcaagccctacggtgatctgcggcactttaccgactac
atcaccgttcttggacgcatgtaccgagagtaccaccagaactcatctacgtttcacttt
ctgccgctctacgcgaagggctcgacgtgccagcacgacgcgtggtatggcatgttcatg
ctgcggcgccacattctgccgcacctcaacagctgtgatgcggccacgccggatcttgcc
cccggcgccactgcgcagatgctggtggcgtggctgtcgccggcgcttcttgcagagctg
gaccgcaagttcgacgcgatgatcgccatcactcggcagctgtatctcttcatcgacggc
gctgtcgagcatcagggtaacgacgttccggcttatcaggaactcttcaccgtttcgcag
gtgctaatgggtgccttcgaggtgtgcctgaaccgatacatgcgtggctttgtctaccgc
ctcgcacgccatctgcctgcagcactctttcaccgcatcctttccctacgcactctgcct
cccgtcgacgccgaggatatcgtgcggcaggtacgtcaatttgcagaattttgtggccgg
catggcggcagtgacccgctcgatcagcttcgtcgtctgcttgtgacaggcaacctcaac
ctcgaccgagaagaggacttctactgcccgcagacgtctggctgggtggtcatggcggag
cacctgaacttctaccgcttttttgagcagctgcgctgcgtgcaccgtggcaagacgatc
gccgacatgcgctcgagcgaggtgcgtaagtatccgtgtgaggcgtacggctttatctgc
atggtgcaaagccccgacggcgaggactgtggtgtgctgaatcacctgagcatctcgatg
atctcgtcaaactcaccagatgtggcgatgacagcgcagctgcgggagatggtatgcaag
gcggtgccgaacgtacgcagtcgcgcgacgcgcagctcggtggtggatcagctttgtgag
acagtgccggtgtggatggagggcgagttggtcggctacctgagcccgacggacgctatg
aaggctgcagcaacgcttcgccagctcaaggcactcacgctgcgctcgcaggtgcacgtg
agcggcatcgtacgccgcaaggatgcgtcgcccctgcacacgctggaggtggtgtacgtg
gcaccagggagcagggacccggcggggttgtacgtgttctacgactgcggccgtctcatg
cgccctgtgcagctgctcgagtcgtcagtgcgcacaggtgcgactcacctccccttcccg
cttgtgttcattgggacctgggagcagagctgggcggatgtcgccgccgtcccaagcgac
cccctcgacgccgttgtacagctgaaccgcaagtatgagtacatggagcagaacggcacc
aacttcatttccctcacctcagcgaccatccccttcttcgagcacaactgttcgccgcgc
aacctgttccagtgcggccttagcaagcagtcctctggaacgcaactgcaggctctggcg
tggcgcaaggaggcgaagctgttccgcacctactgcccgcagcgctacatcagccgcacc
cttcccatggactactacggcctcgacgacgtgaacctcggcgtcaacgccgtgatcgcc
attctcgcatacaccggctacgacatggatgacgccgtcatcatcaacaccaccaccacc
cagcgcggtatgctgacggctggcgtcacggtcgccaagattgtgaccgcagccggcaga
ggctccgacaaggacgacgtctttgtgtttcacaacttgctctccacgggcgagcgattc
actgcccagttggaggccaatgggctgccgccgaagagggcgaacgcgagtctagaagcc
ttttcctttgaccgagaccacaagtaccctggacttcgggacaacagcgacgtgtactgc
tgcgctaagcgggtggagcgggtggacccgttcacgaacaagtctatctacgagtacacg
cgccaccacgccactaagtggcgccacttcgacaagggcgaggatgcgtgggtccagcag
gtgattccgctcgtgtacagcggaccggatccgacgtccgtactcatgatcttccgcatc
ccgcgcccaccggccgtaggtgacaagttctcatcccgccatggccagaagggtacgcta
ccgctgcacatcagctctcacgacctgcccttctccacgacgagcggcataacgccagac
gtcatcatcaaccctcacgcctttccgtcgcgcatgacggtcggcatgatgctggagatc
atgaccgccaaagtcggtgccatcgagggccgcttcatcgataacagtgcgtggtcaacg
gtagacgaccagccgcgagtggcggagttgatcggcgacgcgctggtcaaggcggggtat
aaccgctacggccgcgaacacctgattgacggtatcagcggagaggagatgaaggcggac
gttttcatgggcatctgcgggtatcagcgtctgcggcacatggtcagcgacaagtggcaa
gcgcgggcgcgtacggacgcgcacacgtaccgagcagtgaccaagacggggcagccggtg
aagggccgcaagcgccatggcggtgtgcgagttggggagatggagcgggacggcttgctg
tcgcacggtattagtgaggtcgtcgttgaccgcctcctgcacgtgtcggacaaaacaaag
gcgttcatctgccctcggtgcggcagtttgctctccctctacgagcgtcacgccaccgag
tacggtacgtggcgcacctgccgcttttgcggcgccggcgcggacgagagcaccgactcg
atcgctatggtggagatcccacaggtgctgcggctgtgggcggcggagctgacgagcatt
ggcattcgcgttgtgctgaagacgtcggagcactctgactttgtgtga
DBGET
integrated database retrieval system
