Leishmania panamensis: LPMP_280540
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Entry
LPMP_280540 CDS
T06539
Name
(RefSeq) RAD50 DNA repair-like protein
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
lpan
Leishmania panamensis
Pathway
lpan03440
Homologous recombination
lpan03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lpan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LPMP_280540
03450 Non-homologous end-joining
LPMP_280540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lpan03032
]
LPMP_280540
03400 DNA repair and recombination proteins [BR:
lpan03400
]
LPMP_280540
DNA replication proteins [BR:
lpan03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
LPMP_280540
DNA repair and recombination proteins [BR:
lpan03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
LPMP_280540
BRCA1-C complex
LPMP_280540
NHEJ (non-homologous end-joining)
MRX complex
LPMP_280540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
AAA_15
AAA_21
SbcC_Walker_B
AAA_29
ABC_tran
Rad50_zn_hook
RsgA_GTPase
zf-C2H2_6
cobW
AAA_22
Motif
Other DBs
NCBI-GeneID:
22576499
NCBI-ProteinID:
XP_010700395
UniProt:
A0A088RUM2
LinkDB
All DBs
Position
28:complement(179031..183116)
Genome browser
AA seq
1361 aa
AA seq
DB search
MTSIEKLQLCGVRSFDPNPANQQFIQFQKPLTVILGKNGAGKTTIIEALLNACTGAMPPG
SGAERGSFVYDPKVVGETEVKAQIRLIFTGKGSKVMQVIRSFQATRSAHRVTFTTLDNTV
AFQDSATGEVISSTYRSSDVDRVVPEMLGVSPAVLTHVIFCHQEECNWPLGPPKDVKRIF
DDIFAATRYVLALDRLRDNSKEFRRQLKEHEASLMALREHREQAKQLEQQIAQKESLVKA
IQSRSIGIEPELRGLCQAREELRAVEEQIETLQREVAVTSGRLEERREAIRRMGAPTTSQ
TLEDLLEIRRCFGAQMQQLEESLVRDTKRHDAAAARRRIQEEEMYKCRSNVQLLEREALV
HKGNVVQLRELIQHLSSEYVLSEDSIDELSLQRVLQKAEVAVSAARQRICAATECVQQRI
QDAEDGVQGNSRAVDGCNREIEMREHALEGVCRRIKENAAAISALGGDGCRTQLLQVQTE
VEELQQRVAAAEVLRKKGGEAKRSQHILMELEGQNSAVAQLREEMMQQKLMERQGHDLVL
LRQQVDESNAAVATALQRDVLPILQEIGMQVPQDVGADTFSLQTLTSLRTQTAQVQQLKA
EDLRALQTRVLELENMCAIEEQQMSYNTNELDQCRRSVDAGTRQCSGLVSNMEDYEQMLL
QAREAAETASQRRHVLETLATCYHDFMVVAREKGMCAVCERSFESEDALERFLTRNAAKQ
RTSPDQLAAVEAAVTKAQVTYEGFEKLQNVVATVRRNLPRIPDLEAELEALEERVKKNRA
EQRKVSAARDASQHVVHQLDIVFQHLCRVCTMGEKTVALRDTLRRKEKDAEAAQAEQQRQ
PQIRRMQGSGDGAAERVQLPQRSFEELSEAYAASTERLHQLNRQFAEAQRMECGQDENAV
HRQLQERKAALFQAEVAVAKLEDLETVARELQEEAVHHRTRLEELKVQATEAQRSVEVHQ
WRVLQLRTELQKVEAAERGALDTAEQQLRQLQLSLPAVLSYVQNGCNQRLEGLRGHLRET
ESAYEAATQEEEELASRINEARTTLSDQHRRSADMDRQIDVLQQAVSIAADEARLTETER
TLASLKSDRLHDVEQLLGEGAGQASLAALREMITAKITSLEKIRAQQDGNTEAMLLDVSQ
LKQQLRGDKYQNIEKRYRSTFLKVQTTEISIQDIEKYYSALEKAVQSYHQEKITQINQII
AELWRLTYRGSDIDTVEIRSETEGTTTTAARRSYNYRVVMKRGNNEMDMRGRCSAGQKAL
ASIIIRLALSEAFCCDCGILALDEPTTNLDDDNARSLADALRTLIEVRRAVKHFQLVVIT
HDEQFVRALGGQSLEKFYYVHKDREGAFSVIDERTFDQLFA
NT seq
4086 nt
NT seq
+upstream
nt +downstream
nt
atgacgagcatcgagaagttgcagctgtgcggtgttcgcagcttcgacccaaacccagca
aatcagcagtttattcagtttcagaagcctttgacggtcattctcggtaagaatggtgct
ggcaaaaccaccatcatcgaggccctgctgaacgcgtgtacgggggccatgccgcctggc
agtggggctgagaggggttcttttgtctatgatcccaaggtcgttggcgagacagaggtc
aaggcgcagattcgactgatttttacaggaaagggtagtaaggtgatgcaggttatccgc
tccttccaggctacacggagcgctcaccgcgtcacttttaccacactcgacaacaccgtc
gctttccaggactcggctaccggggaggtgatctccagcacgtaccgttccagtgatgtg
gaccgtgtcgtaccggaaatgttgggtgtgtcgcccgctgttctgacacacgtcattttc
tgccaccaggaagagtgcaactggccactggggccgccgaaggatgtgaagcgtatcttt
gacgacatcttcgccgccacccggtacgtcctcgcactggacaggttgcgcgacaacagc
aaagagttccgccgccagctgaaggagcacgaggcaagtctgatggccctacgggagcac
cgcgagcaagcgaagcagctggagcagcagattgcgcagaaggaaagccttgtcaaggcc
attcagagccgcagcatcggcatcgagccagagctgcggggcctgtgccaggcacgggag
gaactgcgtgcagtggaggaacagatcgagacgctgcaacgtgaggtggcggtcaccagc
ggacgtctcgaagagcgccgcgaggccatacgacgcatgggtgcacctaccacaagtcag
acactagaggatttgctcgaaatacgccgctgctttggagcgcagatgcagcaactcgaa
gagagcctcgtgcgcgataccaagcgccacgatgcagccgcagcgcggcggcgcattcaa
gaggaggagatgtacaagtgccgctcgaacgtgcagctgctggagcgtgaggcgctggtg
cacaaggggaatgtggtgcagcttcgcgaacttatccagcacttgtccagcgagtacgtc
ctgagcgaagacagcattgatgagctcagcctgcagcgggtgctccaaaaggcggaggtg
gccgtatcagccgcacgtcagcgcatttgcgctgccacagagtgcgttcagcagcgtatt
caagacgcagaggacggcgtgcagggcaactctcgcgcggtggatggatgcaacagggag
atcgagatgcgcgaacacgccctggaaggtgtgtgccgccgcatcaaggagaacgccgct
gccatctcggcccttggcggcgacgggtgccgcacacagctgctccaggttcagaccgag
gtggaagagctgcagcagcgtgtcgccgccgctgaagtgttgcggaagaagggcggtgag
gcgaagcgcagtcagcacattctcatggagttagaggggcagaacagtgcggtggcccaa
ctgcgcgaggagatgatgcagcagaagttgatggagcgtcaggggcacgatctggtgttg
ctgcgtcagcaggtcgacgaatccaatgcggctgtggcgacggcgttacagcgagatgta
ctcccgattttgcaagagatcggcatgcaagtcccacaggatgtgggtgctgacaccttc
tcattgcaaactctaacgtctttgcgcacccaaaccgctcaggtacagcagctcaaggcg
gaggacttgcgcgcgctgcagacacgcgtgctagagctagagaatatgtgtgccatagag
gagcagcagatgtcctacaacaccaatgagctagaccagtgtcgccgctctgttgatgcc
ggcactagacaatgctccggtctcgtctctaacatggaggactacgagcaaatgctacta
caggccagggaggcagcagagacggcgtcgcagaggcgccacgtcctggagacccttgcg
acgtgctaccacgattttatggtggtggcgagggagaaggggatgtgcgccgtctgcgag
cgttcctttgagagtgaggacgcgttggagcgttttctgacgcgaaatgcagccaaacag
cgcaccagccccgatcaactggcggctgtggaggcggccgtcaccaaagcccaggtgacc
tacgaaggttttgaaaagctgcagaacgtcgtggcgactgtgcggcggaacttgccgcgt
attccagatctggaggccgaacttgaagcgcttgaggagagggtgaagaagaatcgagcg
gagcagcgcaaggtctctgcggcccgcgatgcctctcagcatgtggtgcatcagctagac
atcgtgttccaacatctgtgcagagtgtgcaccatgggggagaaaacggtggcactgcgc
gacacactgaggcggaaggagaaggacgctgaggcggcgcaggcggagcaacagcgacag
ccacagatacgacgaatgcagggcagcggcgacggtgccgcggaaagagttcagctgccg
cagcgctcctttgaggagctttctgaggcctacgcggcttcgacggagcggctgcaccag
ctcaacaggcagtttgctgaggcccaacggatggagtgcggccaggacgagaatgcggtg
catcggcagctgcaggagcgcaaggcagcgctgtttcaggcggaggttgcggtggcaaag
ctggaggatctagagacggtagctcgtgagctgcaggaggaggcggttcaccaccgcacg
cgactggaggagctgaaggttcaggcaacagaagcgcagcgtagcgtggaggtgcaccag
tggcgcgttctgcaactgcgtaccgagcttcaaaaggtggaagctgccgagcgcggcgct
ttggacacagcggaacagcagctccgccagttgcagctttcactgcctgcggtgctcagc
tacgtacagaacggctgcaaccaacgattggaggggcttcgggggcacctacgcgagacc
gagagcgcgtacgaggccgcgacccaggaggaagaggagctagccagtcggattaacgaa
gctcggacgacgctaagtgaccagcaccgccgctccgctgacatggaccgccagatcgat
gttctgcagcaggcggtgtccatcgcggccgacgaggcgcgcctgacagagacggagcgc
actctcgcctcgctgaagtcggaccgcctgcacgacgtggagcagctattgggcgagggg
gcgggacaggcgagcctcgcagcactgcgtgagatgatcaccgccaaaatcacgtcgcta
gagaagatacgcgcgcagcaagacggcaatacggaggcgatgctgcttgatgtgagtcag
ctgaagcagcagctgcgtggcgacaagtaccagaacatcgaaaagcgttaccggtcgact
tttctgaaagtgcaaacgacggagatatctatccaggatatcgagaagtactacagcgct
ctggagaaggcggtgcagtcgtaccaccaggagaagattacacagattaaccagatcatc
gcggagctatggcgcctgacgtaccgcggcagcgacattgacacagtggagatccggtca
gagaccgaggggacgacaacgactgcggcgcggcgcagctacaattaccgcgttgtcatg
aaacgtggaaacaatgagatggatatgcgtggtcgctgcagcgctgggcagaaggctctt
gcctcgatcatcattcggctcgcgctgagcgaagccttctgctgcgactgcggtatcctc
gccctagatgaaccgacaacaaacctcgacgacgacaacgctcgcagcctggcggacgcg
ctgcggaccctcattgaggtgcggagggcggtgaagcactttcaactcgttgttatcacg
cacgacgagcagtttgtgcgtgcgttgggtggccagtcgctggagaagttctactacgtt
cacaaggatcgcgagggtgccttctcggtgattgacgagcgcacatttgaccagctcttt
gcgtga
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integrated database retrieval system