KEGG   Leishmania panamensis: LPMP_280540
Entry
LPMP_280540       CDS       T06539                                 
Name
(RefSeq) RAD50 DNA repair-like protein
  KO
K10866  DNA repair protein RAD50 [EC:3.6.-.-]
Organism
lpan  Leishmania panamensis
Pathway
lpan03440  Homologous recombination
lpan03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:lpan00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    LPMP_280540
   03450 Non-homologous end-joining
    LPMP_280540
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lpan03032]
    LPMP_280540
   03400 DNA repair and recombination proteins [BR:lpan03400]
    LPMP_280540
DNA replication proteins [BR:lpan03032]
 Eukaryotic type
  DNA Replication Termination Factors
   MRN complex
    LPMP_280540
DNA repair and recombination proteins [BR:lpan03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    MRN(MRX) complex
     LPMP_280540
    BRCA1-C complex
     LPMP_280540
   NHEJ (non-homologous end-joining)
    MRX complex
     LPMP_280540
SSDB
Motif
Pfam: AAA_23 SMC_N AAA_15 AAA_21 SbcC_Walker_B AAA_29 ABC_tran Rad50_zn_hook RsgA_GTPase zf-C2H2_6 cobW AAA_22
Other DBs
NCBI-GeneID: 22576499
NCBI-ProteinID: XP_010700395
UniProt: A0A088RUM2
LinkDB
Position
28:complement(179031..183116)
AA seq 1361 aa
MTSIEKLQLCGVRSFDPNPANQQFIQFQKPLTVILGKNGAGKTTIIEALLNACTGAMPPG
SGAERGSFVYDPKVVGETEVKAQIRLIFTGKGSKVMQVIRSFQATRSAHRVTFTTLDNTV
AFQDSATGEVISSTYRSSDVDRVVPEMLGVSPAVLTHVIFCHQEECNWPLGPPKDVKRIF
DDIFAATRYVLALDRLRDNSKEFRRQLKEHEASLMALREHREQAKQLEQQIAQKESLVKA
IQSRSIGIEPELRGLCQAREELRAVEEQIETLQREVAVTSGRLEERREAIRRMGAPTTSQ
TLEDLLEIRRCFGAQMQQLEESLVRDTKRHDAAAARRRIQEEEMYKCRSNVQLLEREALV
HKGNVVQLRELIQHLSSEYVLSEDSIDELSLQRVLQKAEVAVSAARQRICAATECVQQRI
QDAEDGVQGNSRAVDGCNREIEMREHALEGVCRRIKENAAAISALGGDGCRTQLLQVQTE
VEELQQRVAAAEVLRKKGGEAKRSQHILMELEGQNSAVAQLREEMMQQKLMERQGHDLVL
LRQQVDESNAAVATALQRDVLPILQEIGMQVPQDVGADTFSLQTLTSLRTQTAQVQQLKA
EDLRALQTRVLELENMCAIEEQQMSYNTNELDQCRRSVDAGTRQCSGLVSNMEDYEQMLL
QAREAAETASQRRHVLETLATCYHDFMVVAREKGMCAVCERSFESEDALERFLTRNAAKQ
RTSPDQLAAVEAAVTKAQVTYEGFEKLQNVVATVRRNLPRIPDLEAELEALEERVKKNRA
EQRKVSAARDASQHVVHQLDIVFQHLCRVCTMGEKTVALRDTLRRKEKDAEAAQAEQQRQ
PQIRRMQGSGDGAAERVQLPQRSFEELSEAYAASTERLHQLNRQFAEAQRMECGQDENAV
HRQLQERKAALFQAEVAVAKLEDLETVARELQEEAVHHRTRLEELKVQATEAQRSVEVHQ
WRVLQLRTELQKVEAAERGALDTAEQQLRQLQLSLPAVLSYVQNGCNQRLEGLRGHLRET
ESAYEAATQEEEELASRINEARTTLSDQHRRSADMDRQIDVLQQAVSIAADEARLTETER
TLASLKSDRLHDVEQLLGEGAGQASLAALREMITAKITSLEKIRAQQDGNTEAMLLDVSQ
LKQQLRGDKYQNIEKRYRSTFLKVQTTEISIQDIEKYYSALEKAVQSYHQEKITQINQII
AELWRLTYRGSDIDTVEIRSETEGTTTTAARRSYNYRVVMKRGNNEMDMRGRCSAGQKAL
ASIIIRLALSEAFCCDCGILALDEPTTNLDDDNARSLADALRTLIEVRRAVKHFQLVVIT
HDEQFVRALGGQSLEKFYYVHKDREGAFSVIDERTFDQLFA
NT seq 4086 nt   +upstreamnt  +downstreamnt
atgacgagcatcgagaagttgcagctgtgcggtgttcgcagcttcgacccaaacccagca
aatcagcagtttattcagtttcagaagcctttgacggtcattctcggtaagaatggtgct
ggcaaaaccaccatcatcgaggccctgctgaacgcgtgtacgggggccatgccgcctggc
agtggggctgagaggggttcttttgtctatgatcccaaggtcgttggcgagacagaggtc
aaggcgcagattcgactgatttttacaggaaagggtagtaaggtgatgcaggttatccgc
tccttccaggctacacggagcgctcaccgcgtcacttttaccacactcgacaacaccgtc
gctttccaggactcggctaccggggaggtgatctccagcacgtaccgttccagtgatgtg
gaccgtgtcgtaccggaaatgttgggtgtgtcgcccgctgttctgacacacgtcattttc
tgccaccaggaagagtgcaactggccactggggccgccgaaggatgtgaagcgtatcttt
gacgacatcttcgccgccacccggtacgtcctcgcactggacaggttgcgcgacaacagc
aaagagttccgccgccagctgaaggagcacgaggcaagtctgatggccctacgggagcac
cgcgagcaagcgaagcagctggagcagcagattgcgcagaaggaaagccttgtcaaggcc
attcagagccgcagcatcggcatcgagccagagctgcggggcctgtgccaggcacgggag
gaactgcgtgcagtggaggaacagatcgagacgctgcaacgtgaggtggcggtcaccagc
ggacgtctcgaagagcgccgcgaggccatacgacgcatgggtgcacctaccacaagtcag
acactagaggatttgctcgaaatacgccgctgctttggagcgcagatgcagcaactcgaa
gagagcctcgtgcgcgataccaagcgccacgatgcagccgcagcgcggcggcgcattcaa
gaggaggagatgtacaagtgccgctcgaacgtgcagctgctggagcgtgaggcgctggtg
cacaaggggaatgtggtgcagcttcgcgaacttatccagcacttgtccagcgagtacgtc
ctgagcgaagacagcattgatgagctcagcctgcagcgggtgctccaaaaggcggaggtg
gccgtatcagccgcacgtcagcgcatttgcgctgccacagagtgcgttcagcagcgtatt
caagacgcagaggacggcgtgcagggcaactctcgcgcggtggatggatgcaacagggag
atcgagatgcgcgaacacgccctggaaggtgtgtgccgccgcatcaaggagaacgccgct
gccatctcggcccttggcggcgacgggtgccgcacacagctgctccaggttcagaccgag
gtggaagagctgcagcagcgtgtcgccgccgctgaagtgttgcggaagaagggcggtgag
gcgaagcgcagtcagcacattctcatggagttagaggggcagaacagtgcggtggcccaa
ctgcgcgaggagatgatgcagcagaagttgatggagcgtcaggggcacgatctggtgttg
ctgcgtcagcaggtcgacgaatccaatgcggctgtggcgacggcgttacagcgagatgta
ctcccgattttgcaagagatcggcatgcaagtcccacaggatgtgggtgctgacaccttc
tcattgcaaactctaacgtctttgcgcacccaaaccgctcaggtacagcagctcaaggcg
gaggacttgcgcgcgctgcagacacgcgtgctagagctagagaatatgtgtgccatagag
gagcagcagatgtcctacaacaccaatgagctagaccagtgtcgccgctctgttgatgcc
ggcactagacaatgctccggtctcgtctctaacatggaggactacgagcaaatgctacta
caggccagggaggcagcagagacggcgtcgcagaggcgccacgtcctggagacccttgcg
acgtgctaccacgattttatggtggtggcgagggagaaggggatgtgcgccgtctgcgag
cgttcctttgagagtgaggacgcgttggagcgttttctgacgcgaaatgcagccaaacag
cgcaccagccccgatcaactggcggctgtggaggcggccgtcaccaaagcccaggtgacc
tacgaaggttttgaaaagctgcagaacgtcgtggcgactgtgcggcggaacttgccgcgt
attccagatctggaggccgaacttgaagcgcttgaggagagggtgaagaagaatcgagcg
gagcagcgcaaggtctctgcggcccgcgatgcctctcagcatgtggtgcatcagctagac
atcgtgttccaacatctgtgcagagtgtgcaccatgggggagaaaacggtggcactgcgc
gacacactgaggcggaaggagaaggacgctgaggcggcgcaggcggagcaacagcgacag
ccacagatacgacgaatgcagggcagcggcgacggtgccgcggaaagagttcagctgccg
cagcgctcctttgaggagctttctgaggcctacgcggcttcgacggagcggctgcaccag
ctcaacaggcagtttgctgaggcccaacggatggagtgcggccaggacgagaatgcggtg
catcggcagctgcaggagcgcaaggcagcgctgtttcaggcggaggttgcggtggcaaag
ctggaggatctagagacggtagctcgtgagctgcaggaggaggcggttcaccaccgcacg
cgactggaggagctgaaggttcaggcaacagaagcgcagcgtagcgtggaggtgcaccag
tggcgcgttctgcaactgcgtaccgagcttcaaaaggtggaagctgccgagcgcggcgct
ttggacacagcggaacagcagctccgccagttgcagctttcactgcctgcggtgctcagc
tacgtacagaacggctgcaaccaacgattggaggggcttcgggggcacctacgcgagacc
gagagcgcgtacgaggccgcgacccaggaggaagaggagctagccagtcggattaacgaa
gctcggacgacgctaagtgaccagcaccgccgctccgctgacatggaccgccagatcgat
gttctgcagcaggcggtgtccatcgcggccgacgaggcgcgcctgacagagacggagcgc
actctcgcctcgctgaagtcggaccgcctgcacgacgtggagcagctattgggcgagggg
gcgggacaggcgagcctcgcagcactgcgtgagatgatcaccgccaaaatcacgtcgcta
gagaagatacgcgcgcagcaagacggcaatacggaggcgatgctgcttgatgtgagtcag
ctgaagcagcagctgcgtggcgacaagtaccagaacatcgaaaagcgttaccggtcgact
tttctgaaagtgcaaacgacggagatatctatccaggatatcgagaagtactacagcgct
ctggagaaggcggtgcagtcgtaccaccaggagaagattacacagattaaccagatcatc
gcggagctatggcgcctgacgtaccgcggcagcgacattgacacagtggagatccggtca
gagaccgaggggacgacaacgactgcggcgcggcgcagctacaattaccgcgttgtcatg
aaacgtggaaacaatgagatggatatgcgtggtcgctgcagcgctgggcagaaggctctt
gcctcgatcatcattcggctcgcgctgagcgaagccttctgctgcgactgcggtatcctc
gccctagatgaaccgacaacaaacctcgacgacgacaacgctcgcagcctggcggacgcg
ctgcggaccctcattgaggtgcggagggcggtgaagcactttcaactcgttgttatcacg
cacgacgagcagtttgtgcgtgcgttgggtggccagtcgctggagaagttctactacgtt
cacaaggatcgcgagggtgccttctcggtgattgacgagcgcacatttgaccagctcttt
gcgtga

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