Leishmania panamensis: LPMP_321360
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Entry
LPMP_321360 CDS
T06539
Name
(RefSeq) RNA polymerase-like protein, putative
KO
K03015
DNA-directed RNA polymerase II subunit RPB7
Organism
lpan
Leishmania panamensis
Pathway
lpan03020
RNA polymerase
lpan03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lpan00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LPMP_321360
09124 Replication and repair
03420 Nucleotide excision repair
LPMP_321360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpan03021
]
LPMP_321360
03019 Messenger RNA biogenesis [BR:
lpan03019
]
LPMP_321360
03400 DNA repair and recombination proteins [BR:
lpan03400
]
LPMP_321360
Transcription machinery [BR:
lpan03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Pol II specific subunits
LPMP_321360
Messenger RNA biogenesis [BR:
lpan03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
LPMP_321360
DNA repair and recombination proteins [BR:
lpan03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
LPMP_321360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SHS2_Rpb7-N
PQQ
Motif
Other DBs
NCBI-GeneID:
22577877
NCBI-ProteinID:
XP_010701822
UniProt:
A0A088SGS9
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All DBs
Position
32:487505..488104
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AA seq
199 aa
AA seq
DB search
MFYKIVLQRTVNVKPADLCNTLNRSLLTFLREAVEGKPLPSPDSVASIALDFVTASKSSA
VVIAVLDILNAETLQGKVLDDGSVTFRLTYEAMVLKLHRGEVLDLLVSDVDETGFWASVY
GVNKLFVNRNQMGEDVKTGALEWSFEAETAAWVSNDDRHSIKKDTMVRLRVIAETPQSER
GMAVGTIGAPFLGPRIGSY
NT seq
600 nt
NT seq
+upstream
nt +downstream
nt
atgttctacaagatagttcttcagcgcacggtaaatgtaaagccggcagacctgtgcaac
accctgaatcgcagtcttctgaccttcctgcgggaggcagtcgagggaaaaccgcttccg
tcgccggacagcgtcgccagtatcgcgctcgacttcgtcacggcaagcaagtcctctgcg
gtggtgattgccgtgctcgatatcctcaatgcggagacgctgcagggcaaggtgctggat
gacggaagcgtgacgttccggcttacctatgaggcgatggtgctgaagctgcaccgaggg
gaggtgctcgacctgctggtcagtgatgtggacgagaccggcttctgggcgagcgtttat
ggggtcaataagcttttcgtgaatcgaaaccaaatgggcgaagatgtgaaaacaggcgct
ttggagtggtctttcgaggcggaaacggctgcgtgggtcagcaacgacgatcgccactcc
atcaagaaggatacgatggtgcggctgcgcgtgattgccgaaaccccgcaatctgagcgt
ggtatggcggtaggcaccatcggtgctccgtttctgggcccacgtatcggcagctattag
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