Leishmania panamensis: LPMP_344870
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Entry
LPMP_344870 CDS
T06539
Symbol
PABP1
Name
(RefSeq) polyadenylate-binding protein 1
KO
K13126
polyadenylate-binding protein
Organism
lpan
Leishmania panamensis
Pathway
lpan03015
mRNA surveillance pathway
lpan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpan00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
LPMP_344870 (PABP1)
09123 Folding, sorting and degradation
03018 RNA degradation
LPMP_344870 (PABP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpan03019
]
LPMP_344870 (PABP1)
03041 Spliceosome [BR:
lpan03041
]
LPMP_344870 (PABP1)
Messenger RNA biogenesis [BR:
lpan03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
LPMP_344870 (PABP1)
mRNA cycle factors
Stress granule specific factors
LPMP_344870 (PABP1)
Spliceosome [BR:
lpan03041
]
Complex C
Other components
Complex C specific factors
LPMP_344870 (PABP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_7
DUF4523
Pkinase_C
Motif
Other DBs
NCBI-GeneID:
22578992
NCBI-ProteinID:
XP_010702906
UniProt:
A0A088S1M1
LinkDB
All DBs
Position
34:<1809313..>1810977
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AA seq
554 aa
AA seq
DB search
MTTTVQETATPVAQQPQVSKPMQIASIYVGDLDAAINEPQLVELFKPFGTILNVRVCRDI
ITQRSLGYGYVNFDNHHSAERAIESMNFRRVGDKCVRLMWQQRDPSLRYSGNGNVFVKNL
EKDVDSKSLHDIFTKFGSILSCKVMEDEEGKSRGYGFVHFKDEISAKDAIVKMNGAAVHA
SEDKKALYVANFIRRNARLAALVANFTNVYIKQVLPTVNKEVIENFFAKFGGITSAAACK
DKSGRVFAFCNFEKHDDAVKAVEAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYM
QHQSLGNNLYVRNFDPEFTGADLLELFKEYGDVKSCRVMMSESGASRGFGFVSFSNADEA
NAALREMNGRMLNGKPLIVNIAQRRDQRYTMLRLQFQQRLQMMMRQMHQPMPFVGGQGRP
MRARGGRQQQGGRAQGHPMPMPSPQQSQGFATPSAVGFVQATPKHSPGQVPETPPLPPIT
PQELESMSPQEQRAALGDRLFLKVYEIAPELAPKITGMFLEMNPKEAYELLNDQKRLEER
VTEALCVLKAHQTV
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgactgtccaggagactgctaccccggtggcacaacagccgcaggtgagcaag
ccgatgcagattgcttccatctacgttggggaccttgatgccgccatcaacgagccgcag
ctggtagagttgttcaaaccgtttggcaccatcctgaacgtgcgtgtatgccgcgacatc
atcacccagcgctcgctgggctatggctacgtcaacttcgacaaccaccacagcgcggag
agggcgatcgagtcgatgaacttcagacgcgtcggcgacaagtgtgtgcgcctcatgtgg
cagcagcgcgacccctctctccgctacagtggcaacggcaacgtgttcgtgaagaacctg
gagaaggatgttgacagcaagagcctgcacgacatcttcacgaagttcggttccattctc
tcctgcaaggtaatggaagacgaagagggcaagagccgcggctacggcttcgttcacttc
aaggacgagatctctgccaaggacgcgattgtgaagatgaacggtgctgccgttcacgcc
tcggaggacaagaaggcactgtacgtggccaacttcattcgccgcaacgctcgccttgct
gcgctcgtggcaaacttcacgaacgtgtacattaagcaggtgctgccgaccgtgaacaag
gaggtaatcgagaatttctttgcaaagttcggcggcatcacgtccgctgcggcctgcaaa
gacaagagcggccgtgtgttcgccttctgcaacttcgagaagcatgacgacgccgttaag
gcggttgaggcgatgcacgaccaccacatcgacggcatcactgctcctggcgagaagttg
tatgtgcaacgtgcccagccccgcagcgagcgcctcattgctcttcgccagaagtatatg
cagcaccaatcgcttggcaacaacctgtacgttcgcaatttcgatcccgagttcacaggc
gccgacttgcttgagctcttcaaggagtatggcgatgtcaagagctgccgcgtgatgatg
agcgagagtggcgcgagtcgcggcttcggtttcgttagtttctcgaacgccgacgaggcc
aacgccgcgctgcgcgagatgaacggccgcatgctgaatggcaagcccctcattgtgaac
attgcccagcgccgcgaccagcgctacacgatgctgcgcctgcagttccagcagcgtctg
cagatgatgatgcgccagatgcaccaaccgatgccgttcgtcggcggccagggccgtccg
atgcgtgctcgcggtggtcgacagcagcagggcggtcgcgcgcagggccatccaatgccg
atgccctccccgcagcagtcgcagggttttgccacgccgtcggctgtcggcttcgtgcag
gcgacaccgaagcactctccaggtcaggttcccgagacgccgcctctgccgccgatcacg
ccgcaggagctcgaaagcatgtcaccgcaggagcagcgcgccgctttgggtgaccgtctc
ttcctcaaggtatacgagatcgcgccggagctggcgccgaagattacgggtatgttcctg
gagatgaaccccaaggaggcgtacgaactgctcaacgatcagaagcgtctcgaggagcgc
gtgacagaggccctctgcgtactcaaggcgcaccagacggtatga
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