Leishmania panamensis: LPMP_354330
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Entry
LPMP_354330 CDS
T06539
Name
(RefSeq) hypothetical protein
KO
K14554
U3 small nucleolar RNA-associated protein 21
Organism
lpan
Leishmania panamensis
Pathway
lpan03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
lpan00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
LPMP_354330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lpan03009
]
LPMP_354330
Ribosome biogenesis [BR:
lpan03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
LPMP_354330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40_WDHD1_1st
Utp21
WD40
Beta-prop_EML_2
WDR55
WD40_CDC20-Fz
EIF3I
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_TEP1_2nd
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_LRRK2
NBCH_WD40
Beta-prop_HPS5
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_IFT140_1st
Beta-prop_Nup120_160
Beta-prop_CAF1B_HIR1
Beta-prop_VPS8
Beta-prop_RIG_1st
PQQ_2
Beta-prop_NOL10_N
Utp12
TAF1C_beta-prop
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
22579461
NCBI-ProteinID:
XP_010703366
UniProt:
A0A088S2X7
LinkDB
All DBs
Position
35:1549305..1552268
Genome browser
AA seq
987 aa
AA seq
DB search
MQSFDPFRVVGSICGSVPVSPTLLYGTPVLMVATGRTFQLYKGKELAMMRGGPTFQDAVQ
AVAQAGKYRAVGEGPRLHVYVHHKPLWSSHHESATKPNITLLLAQDDLLFSVGEDKRIVV
WELKTGTVLQEMLVEKSETVTCLALLTAYTNKLLLATAEGTLQLWNFRSGVCLWYSVRSC
SGSGSSTVQTSRATAGSVAAITALACSRYKDIIVYGTTEGKAVVCNVAADEVITTFDHGD
SGAVTSLLFRTDKDGLLVTGTSRGEVVVWNLENRCMDGTLTRSKQVRSELEALERPHVDV
VHSLVMFDLPEYTSLLVTGGADNALMQFRFDTVDGLGVLVRERRGHMGSCTDAIFYNTDL
LVTAGNDRALRVTHVFSDRASWELSQGKLGKRGRELNMGREAVKLPPAIALAASTTRNYQ
WSSLVSLHTASALACGWRMDSRAMEFKLSGIQTSAHTARALALSDCGNYAVVGYSSGNVA
VLSLQNRSVRHLFDAGLGADRAHDSSVECVEVACGNTVVVTAGLDGVIKMWDLWSGKLKA
TIPTGQPMTKSCLHESSSLFIVAQHFTIRVYHANPDAGLTEGELRVPVRELDGHNSPVTA
LALAPDTYRYVVSTSGDGALLIWDLAAAACVGQYRFVSPALSLSFHPDALFLVTTHAGER
GAYLWVNNIRYGYVPEVVLAPKSNAVETLPWLHFPTAHGAAEGTSEGSANGGVQRTSATA
ALTEAEEEERAVAEAEEREAATTEACLFDASQDIALVRRRQIEAQQVALDAIATEGMQLA
DVPQRLWFNLTVLDQIKEKNQPLLPPKKKDVPFFLPTTQELRPTFLVLVSDNRKGDAENE
KGRVMRADMEALTRVQEMLVNAKHDALMDYFLSLKTAQAIDLELKRAVDYVNGSSYTAAE
LARMQACVKGLLSFITTWLRRNQNVDLVQGILADVVRSHGALLTRFGDALVPALEELAEV
QNMMRYSLDHLVSYPACLAGTFSGTIF
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atgcaatcctttgacccgtttcgggtggtgggctccatctgcggatctgtcccggtgtcc
cccacgctgctctacggtacgccggtgctgatggtggccactggccgcacctttcagctg
tacaagggaaaggaactggcgatgatgcgcggaggtccgacgtttcaggacgcggtgcag
gcggtggcacaggccggcaagtaccgcgctgtcggggaggggccgcgcctgcacgtctac
gtgcaccacaagcccctctggtcgagccatcatgaatctgccacaaaaccgaacatcaca
ctcctgttggcccaggatgacctcctcttcagcgttggcgaggacaagcgtatcgttgtg
tgggagcttaagacgggcacggtgctacaagagatgttggtggagaagagtgagacggtc
acgtgccttgcacttttgacagcgtacacgaacaagctgcttctcgcgacggcagaggga
acgctgcagctctggaacttccgctctggtgtctgcctgtggtactccgtgcgcagctgt
agcggcagtggtagtagcaccgtgcagacatcacgcgccaccgctgggagtgtcgctgcc
atcacggcgctcgcttgtagtaggtacaaggacatcatcgtctacggcacgacggagggg
aaggctgttgtgtgcaacgtggcagcggatgaggtaatcaccactttcgaccatggcgac
agcggcgccgttacttcgctgctatttcgcacggacaaggacggcctgctggtgaccgga
acgagtcgtggggaggtagtcgtctggaacctcgaaaatcgatgcatggatggcaccttg
acccggtctaagcaagtgcggtcggagctggaggcactggaacgtcctcacgtcgatgtc
gtgcactcgctcgtcatgttcgacttacctgagtacacatcactgctcgtcacaggtggc
gctgacaacgccctcatgcaattccgttttgacaccgtggacggtcttggtgttttggtg
cgggagcgccgcgggcacatggggagctgcacagacgccatattttacaacacagacctt
cttgtcacggccggaaacgaccgagccctgcgtgtcacgcacgtcttttccgatcgtgcc
tcatgggagttgtcgcagggcaagttgggcaagcgcgggcgcgagctgaacatggggcgg
gaagccgtgaagctgcctcctgccatcgcgcttgccgcctcgaccacgcgcaactaccag
tggtcgagtcttgtgtcgctacacaccgcatctgcgctggcatgcggctggcgcatggat
agccgcgcgatggagtttaagctatccggcatccaaacttccgcccacaccgcccgtgcg
ttggcgctgtcggactgcggcaactacgccgtcgtcgggtactccagtggaaacgtcgcc
gttttgagcctgcagaaccgcagtgtgcgccacctgttcgacgccggtcttggtgccgat
cgagctcatgacagctcggtagaatgcgtagaagtggcatgcggcaataccgtcgtcgtg
acggccgggttggacggtgtgatcaagatgtgggacctgtggagtggcaagttgaaggca
actattcctaccggccagccaatgaccaagtcgtgtctgcacgagtcgtcatcgctcttt
attgtagctcaacactttaccattcgcgtctatcatgccaaccctgacgctggcctcacc
gaaggggagttgcgtgtcccagtccgcgagctggacggccacaacagccctgttacggca
cttgcactggctcctgacacctaccgctacgtagtgtcgacttccggagatggtgcgcta
ctcatatgggacttggccgccgccgcctgtgtcgggcagtaccgcttcgtatcgcccgct
ttatccctcagttttcaccctgatgcgctcttcctcgtcactacccacgccggtgagcgc
ggcgcgtatctgtgggtcaacaacatccgctatgggtacgtgccggaggtggttctggct
ccgaagtcgaacgcggtggagacgctgccgtggctgcacttccccacagcgcacggggca
gctgaggggactagcgagggtagtgcaaacggtggcgtgcagcgcacgtctgcaaccgcg
gcactcacggaggcggaggaagaagagcgcgcggtcgctgaggcagaggagcgggaggca
gccaccaccgaggcatgcttgtttgatgcatcgcaggacattgccctggtgcgccgtcga
cagatagaggcacagcaggtggcgctcgatgcaatcgcgacagaagggatgcagctcgct
gacgtgccgcagcgcctttggtttaacctcactgttctggaccaaatcaaggagaagaac
caacctctgctcccgcccaagaaaaaagatgtgcccttctttttgcccaccacacaggag
cttcgacccacttttctggtcctggtgtctgataaccgcaagggcgatgccgagaacgag
aaggggcgggttatgcgtgctgacatggaggcgctgacgcgggtgcaggagatgctcgtg
aacgcaaaacatgatgccctcatggactactttttatctctcaaaacggctcaagcgatc
gacctggagctgaagcgcgcggtggactacgtgaacggcagcagctacactgctgctgag
ctggcgaggatgcaagcatgcgtgaaaggtttgttgtctttcataacgacgtggttgcga
cgcaaccaaaatgtcgacttggtgcaaggcatccttgcggatgtggttcgctcgcatgga
gcgttgctgactcgttttggggatgcgctcgtgccggcgctggaggagctggcggaggtg
cagaacatgatgcgctactctctagatcacctcgtgtcgtacccagcctgcctcgcgggg
accttctctggcactatcttttaa
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