Lacticaseibacillus paracasei subsp. paracasei: LBPC_0926
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Entry
LBPC_0926 CDS
T04768
Name
(GenBank) putative hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lpap
Lacticaseibacillus paracasei subsp. paracasei
Pathway
lpap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LBPC_0926
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpap03019
]
LBPC_0926
Messenger RNA biogenesis [BR:
lpap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LBPC_0926
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_2
Lactamase_B
RMMBL
Ish1
Lactamase_B_3
BRK
Motif
Other DBs
NCBI-ProteinID:
BAN71222
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Position
complement(984916..986157)
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AA seq
413 aa
AA seq
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MTTIRFLNGLNTIGGNIVEFATKTSRVIMDFGVAADLSNETVSSAIDNGKLPHVPELFFD
QPDVYTHEAIFISHLHIDHMGALQYLKKPIPIYLSEPSYKLYQLLIKLGIEKPVANLHPL
AYEQPITIGDLTVTGFHSDHDEPGVMALLVDDGSRRYAHSGDVRLNGPHAERVHAWAKRF
NQEKLSLFMLEGTSFSFDTAAPVEDQDHPSIPLTEMSLQKQFQTVLAESPTLVVINPYIR
NYERLAGFQASAHTAGRQLVWEPDDAAVLTTMTDQKPDAILGQTISLTDIARDPQHYVLQ
NSFDHLERLTDMPITTYIHSNGEPLGDYDPRFAQLKDWLEAHHIPLQFMNASGHASREDL
ITLAKEVNPRTIVPWHSFHPEREAEALDTQTNAAVVLPERDLYYDFDELNEEE
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
gtgacaacaattcgctttttaaatgggttaaacaccatcggcggcaacatcgtcgaattc
gcaactaaaaccagccgcgttatcatggacttcggcgtggctgctgatctcagcaacgaa
acagtcagctctgccatcgataatggtaaattgccgcatgtgccggaactattttttgat
caaccagacgtttacacacatgaggccatctttatctcacatctgcacattgaccacatg
ggtgcattgcaatatttaaagaaaccgattccgatttatctttcggaaccatcctataag
ctctatcaactgttaatcaaactaggcatcgaaaagccagttgcaaatctgcatcccctt
gcctatgaacagcccataaccattggtgacctcaccgtaacaggcttccacagtgatcac
gacgagccgggcgtcatggcgctcctagtcgatgacggctcacgacgctatgcccattcc
ggtgatgtccggttaaatggcccgcatgctgaacgggttcatgcctgggccaagcgattt
aaccaagaaaagctaagcttgtttatgttggaaggcaccagcttctcttttgacacagct
gcccctgttgaagatcaggatcaccccagcatcccattgaccgaaatgagcctgcagaag
caatttcagacagtgctggcggaaagcccgacgcttgtcgtcatcaatccttacatccgc
aattacgagcgtctggcgggttttcaggccagtgcacacactgccggccgtcaattggtg
tgggaacctgatgacgcggctgtgctgaccaccatgaccgatcaaaaacccgatgctatt
cttggtcaaacaatcagtctgacggacattgcccgtgatccccaacactatgtcctgcaa
aatagttttgaccatctggaacgactgactgacatgcccatcacgacctacatccacagt
aacggcgagccactaggcgattacgacccgcggtttgcgcaactcaaagactggctagaa
gcgcatcacatccccttgcagttcatgaatgcctcgggtcatgctagccgtgaggattta
attactttggcgaaagaagtcaatcctcgaaccattgtgccatggcatagcttccatccg
gaacgcgaagccgaagccttggatacccaaacaaatgccgctgtggtgcttcctgaaaga
gatttgtactatgattttgatgagttaaatgaagaggagtaa
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