Lacticaseibacillus paracasei subsp. paracasei: LBPC_1298
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Entry
LBPC_1298 CDS
T04768
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lpap
Lacticaseibacillus paracasei subsp. paracasei
Pathway
lpap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LBPC_1298
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpap03019
]
LBPC_1298
03400 DNA repair and recombination proteins [BR:
lpap03400
]
LBPC_1298
Enzymes [BR:
lpap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LBPC_1298
Messenger RNA biogenesis [BR:
lpap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LBPC_1298
DNA repair and recombination proteins [BR:
lpap03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LBPC_1298
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
YBR126W-A
DUF7089
Motif
Other DBs
NCBI-ProteinID:
BAN71594
LinkDB
All DBs
Position
1372442..1373851
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AA seq
469 aa
AA seq
DB search
MSQLEAQLQQHFGFQEFRPGQKALIQSVLDGHDTLGILPTGSGKSLCYQLPTLISNKPSL
IVEPLIALMNDQVGRLQAAGEKRVIALSAQMPPVAFTQILKRLASYHYIFVSPEILQRAD
VLMALKRLALGLFVVDEAHCISQWGPDFRPAYLQLGQVRQQLQADAILALTATAPEPVRR
DIVQHLSMQSPAILAGSVDRPNIFLGVETGLTDKEKALRLDQLLHEVVGPTIIYSATRAA
CETLAIRLQKAGHAAAFYHAGLDRHQRDLIQRQFQSDQLHIICATSAFGMGIDKANVRFV
VHTYVPESLEAYYQAIGRAGRDGKQSLAALLVTDHDVQHGAILAGMLPDAALIRLIYAHP
EAYRTFDDPQINLIEAYVDAGFSVEATQQQLQHRLTEKQASFAAMAAFVNESECRRAVLL
QHFDSPIEPHTALCCGEITTTILRQLQPEVPQEQPKLASWQAVFHQIFR
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
gtgtcacaacttgaagcacaacttcaacaacattttggctttcaagaattccgacctgga
caaaaggctttgatccaatcggtgttggatggacatgacacgctgggaattttacctact
ggcagcgggaaatcactctgttatcaattgccgactttgatcagtaacaagccaagttta
attgttgaaccgctcattgccttgatgaatgatcaagttggtcgtttgcaagcagctgga
gaaaaacgggtcattgccttgtcagcgcaaatgccaccggttgcttttacccaaattctc
aaacgattggcaagttaccactatatttttgtctcaccagaaattttacaacgcgctgat
gtgctcatggcgctcaaacgactggccctaggcttatttgtggtagatgaagcgcattgc
atctcacagtgggggccagattttcgacctgcttatttgcagctgggacaagttcgccaa
caattgcaagcagatgcgattcttgccttaaccgcaaccgcaccggagcccgttcgccgt
gacattgtccaacatctaagcatgcaatcgccagcaattttggctgggtcagtcgatcga
ccaaatattttccttggcgttgagaccggcttaacagataaggaaaaggctttaagactg
gatcagttattgcacgaggtggtggggccaacgatcatttatagtgctacccgagccgcg
tgtgagacgttagcgatacgattgcaaaaagccggccatgctgcggccttttatcatgct
gggttggatcggcaccaacgcgatctaatccagcgacagtttcaatcggatcagttgcac
attatctgtgcgacgagtgcgtttggcatggggatcgataaggcaaatgtacggttcgtc
gtgcatacctatgtgccggaatcgcttgaagcttattatcaggcaatcggacgagccggc
cgtgatggcaagcagagtctagcggcgcttttggtgaccgatcatgatgttcagcacggg
gctattttggcggggatgttgccagatgcggcattgattcggctcatctatgcgcatcct
gaggcgtatcgcacttttgacgatccgcagatcaatctgatcgaagcgtatgtagacgct
ggcttttcggtagaggctacgcagcagcaattacagcacagactaactgagaaacaggct
agtttcgcagcgatggcggcttttgttaatgaatcagaatgccgtcgtgctgttctgctg
caacattttgattcgccaattgaaccgcatacggctttgtgctgtggcgagatcaccact
acgatattgcgccaactacagcctgaagtgccacaagaacaaccaaaattagcttcttgg
caggcagtatttcaccaaatctttagataa
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