Limosilactobacillus panis: KZE55_02090
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Entry
KZE55_02090 CDS
T07939
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lpas
Limosilactobacillus panis
Pathway
lpas03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lpas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KZE55_02090 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lpas03400
]
KZE55_02090 (mfd)
Enzymes [BR:
lpas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KZE55_02090 (mfd)
DNA repair and recombination proteins [BR:
lpas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KZE55_02090 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
AAA_16
UB2H
RecG_dom3_C
ERCC3_RAD25_C
CdvA
Motif
Other DBs
NCBI-ProteinID:
QZN93380
LinkDB
All DBs
Position
455951..459490
Genome browser
AA seq
1179 aa
AA seq
DB search
MRLGNFIAKTKEFKKISKEAVPGKRQLITGISGSARTAVLAELLKDRQQPLLVVTDNLGH
LEELVDDFSNLLPADQVFEFPVEEVLAAEVATSSPNYRLQRVQALNALSSNRPVVVVTSV
AGMRRNVVSPAFFAQATLQLKVGGEIDPEKARQQLSAMGYQLQKMVLRPGDFAVRGSIID
IYALNTDNPVRVDLFDTEIDSLRYFDASTQKSIDNVKQVEILPATDLILPPAEFPRVTAA
IKQEYDTITAGLQDGDEDITQQVNNRFTPLLTALKDHQLPSELLEFGNLLYPTPHSLIDY
LGDQGIIYLDDFARLKDSAKKLTDEDQGWLEDKAKYHQLTKVPTVGNDFAQLVQADDHAQ
VLGALFKKGVGNLTLDQLTELTSRPMQRFFGQLPLLKSELQRWRDQGQTVILMAANQERR
KQIAQTMRDFDIQVTETSTTDLRVNVVQLVAGSLNNGFEMPAAGLVVITEGEMFKQVKKG
RHRPQKLTNAERLKSYTDLKPGDYVVHVNHGIGIFSGIKTMEVDGVHQDYMIINYRNNAQ
IFVPVTQLNLVQKYVSSESKHPRINRLGGNEWAKTKRRVASKVEDIADELVDLYAKREAA
KGYAFPKDDYLQNQFDANFPYNETRDQLRSIKEVKQDMEKPRPMDRLLVGDVGYGKTEVA
MRAIFKAVTGGKQVAFLVPTTVLAQQHFDTLSKRFTGFPVKIALMSRFKTGRELKAADKG
LADGTIDIVVGTHRILSKDVHFKDLGLVIVDEEQRFGVKHKERLKELKNNVDVLTLTATP
IPRTLNMSMLGVRDLSVLETPPAGRFPIQTYVMEQNAGAIRDGILREMQRGGQVYYLHNR
VGDIEETVMRLQELVPEAKIGYIHGKMSENELETVLYEFIQGNYDVLVTTSIIETGVDIP
NVNTLFVENADRLGLAQLYQIRGRIGRSNRVAYAYFMYQPNKVLTELGEKRLAAIRDFTE
LGSGFKIAMRDLAIRGAGNILGKQQHGFIDSVGYDLYSSMLNEAVAKKRGKKKTERADAE
VELGVEAYLPDSYVNDQRQKIELYKTIRQAQSDEELLDIQGDLIDRFGDYPAAVGNLLLI
SKIKQHADLAMIEQVKRQRDNILVTFTKVESHLIKAPTIIKLLAKTKFKATLGEQDDRLT
VRLVIQPKMSTADWLNQLSKLITGFANEVTGKGKKVSSK
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
gtgcgtctgggaaactttattgccaaaacaaaagagtttaaaaagattagtaaggaggca
gtgcccgggaagcgccagctgattactggcatttcgggttcggcacggacagctgtgtta
gcggagttgttaaaggaccgccaacagcccctcctggtggtcaccgataacctggggcat
ctagaagaactagtggatgacttcagcaacctgttaccggcggaccaggttttcgaattc
ccggtcgaggaggtcctggcggccgaggtggccaccagttctccaaactaccgccttcaa
cgggtccaggcactgaatgccctcagtagtaaccgtccagtcgtcgttgtgacctcggtg
gcggggatgcggcggaacgtcgtcagtcccgccttctttgcccaggcgaccctccagctg
aaagtgggcggggaaattgatcccgaaaaggcccgtcagcagctgagcgcaatgggttac
caactgcaaaaaatggttttacggcccggtgactttgctgtccggggctcgatcattgac
atttacgccctgaatacggataacccggtccgggtcgacctctttgataccgagattgac
tccctgcgctactttgacgccagcacccaaaagagtatcgataatgttaagcaggtcgag
attctacccgcgactgacttgattttgccaccggcggagttcccccgggtaacggcggca
attaaacaggagtatgacaccatcacagctgggttacaggatggcgatgaggatattacc
cagcaggttaacaaccgctttacaccgctgttgacggccttaaaggaccaccaactacca
agcgaactactggaatttggcaacctcctttacccaacgccgcactctttgattgactac
ctcggtgaccaaggaatcatctatttggatgactttgcccgcctgaaggacagtgccaaa
aaactgacggatgaggaccagggctggttagaggacaaggctaagtaccaccagctgacg
aaggttcccaccgttggcaatgactttgcccaattggtacaggcggatgaccacgcccag
gtcttgggggccctgtttaaaaaaggggtcggtaacctgaccctcgaccaactaacggaa
ctcactagccggcccatgcagcgtttctttggccaactgcccctgttaaagagtgagctg
cagcgctggcgtgaccaggggcagacggtgattctgatggcggccaaccaggagcgtcgt
aaacaaattgcccagacgatgcgtgactttgatattcaggtgaccgaaacaagcaccact
gacttaagagtcaacgttgtccagctcgtggcggggagtttaaacaacggctttgaaatg
ccggcggccggcctggtagtgataactgagggtgaaatgttcaagcaggtcaagaagggc
cgccaccggcctcaaaagcttaccaacgctgaacgactaaagagttacaccgacttgaag
cctggtgactacgttgttcacgtcaaccatggaattgggattttcagtggtatcaagacc
atggaagttgatggtgttcaccaggactacatgatcatcaattaccgaaataacgcccag
atcttcgtcccggttacccagcttaacctggtgcagaagtacgtctcatcagagtccaag
cacccccggatcaaccggctgggtggtaatgaatgggcgaagaccaagcggcgggtagcc
tccaaagttgaggacatcgctgatgagctggtcgacctctatgccaagcgggaagcggcc
aaggggtacgccttccccaaagatgactacctacagaaccagtttgatgctaactttccg
tataatgaaacccgcgaccagttgcggagcataaaggaagttaagcaggacatggaaaag
ccccggccaatggaccgcctgttagtgggggacgtcggctacgggaaaacagaagtggca
atgcgggcaatcttcaaggcggtcacgggcggcaaacaggtagccttcttagtaccaacc
accgttttggcccagcagcactttgatacgctaagcaagcgctttaccggcttcccggtt
aagattgctcttatgtcccggttcaaaacgggcagggaattgaaggccgccgataagggt
ctggccgacgggaccattgacattgtcgttgggacccatcggatcctgtcgaaggatgtt
cactttaaagatctcggcctggtcattgttgatgaagagcagcggtttggcgtcaaacat
aaagaacgtctaaaagaattaaagaacaacgttgatgtgctaactctgactgcaaccccg
attccccgaaccctgaacatgtcgatgcttggcgtacgcgacctgtctgtccttgagact
ccgccagcgggccgtttcccaattcaaacctacgtgatggagcaaaatgctggggctatt
cgtgacggcattcttcgtgaaatgcagcggggcggccaggtctactacctccacaaccgg
gtaggggacattgaagagacggtgatgcgtcttcaggaactggtgccggaggccaagatt
ggctatattcacggtaaaatgagtgaaaatgagcttgagacagtcctgtacgaatttatc
cagggtaactatgacgttctggttaccacgtcgattattgaaactggggttgatattccc
aacgttaacaccctgttcgtggaaaacgctgaccgcctggggcttgcccagctttaccag
attcggggacggattggccggagtaatcgggtggcctatgcctacttcatgtaccagcca
aacaaggtcctaaccgaactcggtgaaaagcgcctggccgccatccgcgactttacggaa
ctggggtctggatttaaaattgcgatgcgggacctggcaattcgtggggctggaaatatc
ttgggtaagcagcagcacggctttattgactccgttggttatgacctgtactcatcaatg
ttgaacgaggcagttgccaagaagcggggaaagaagaagaccgagcgggcagatgccgag
gttgaactcggtgtcgaggcctacctgccggatagttatgttaacgaccaacggcaaaag
attgagctatataagacgattcgccaggcccaaagtgatgaggaactcctcgacatccag
ggtgacctgattgaccgctttggtgactatccggcagcggttggtaacctgttgctgatc
agcaaaatcaaacagcacgccgacctggcaatgattgagcaggtcaagcggcagcgtgat
aatatcttggttaccttcacgaaggttgagagccatttgattaaagcaccgacgattatt
aaactgctggctaagactaagtttaaagcgactttaggggagcaggatgatcgtttgacg
gttcgtctggttatccagcccaagatgtcaactgctgattggttaaaccagctatcaaag
ttgatcaccgggtttgccaatgaggttaccggtaaaggcaaaaaagtaagtagtaagtaa
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