Limosilactobacillus panis: KZE55_07510
Help
Entry
KZE55_07510 CDS
T07939
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
lpas
Limosilactobacillus panis
Brite
KEGG Orthology (KO) [BR:
lpas00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lpas03009
]
KZE55_07510 (rlmD)
Enzymes [BR:
lpas01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
KZE55_07510 (rlmD)
Ribosome biogenesis [BR:
lpas03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
KZE55_07510 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
Methyltransf_15
PrmA
TRM5-TYW2_MTfase
Cons_hypoth95
MTS
Methyltransf_11
Methyltransf_12
RrnaAD
Ubie_methyltran
N6_N4_Mtase
UPF0020
Methyltransf_32
Methyltransf_23
Methyltransf_4
CMAS
Motif
Other DBs
NCBI-ProteinID:
QZN92624
LinkDB
All DBs
Position
complement(1556226..1557602)
Genome browser
AA seq
458 aa
AA seq
DB search
MKVQIPVHKNNDYQAEVTDLTYEGNGVVKVDDFPIFLPNALPGEKITVRVTKVARHFAWG
RVMEWQSKSPDRVDVKDKKYIQTGIAPLGHLKYAAQLKFKQHQIKELLEKAHLGDIEVLP
TMGMDRPYHYRNKAQVPVKMVRGQLQTGFYKRGSHTLVPIEDFYIQDPQIDKAIVVVRDL
LRKYHVTPYDERTGKGVIRTVMVRRGYYSHEVMVVLVTNTKRLPMAKEIVAGIVAGVPEV
KSIVQNINDKKTNRLLGDRDQTLWGADEIHDQLLGIDFAISPLSFYQVNPQQTERLYQTA
IDNAGLDGSQTVIDAYCGIGTISLAVAKHAKQVYGVEIVPAAIEDAKHNAKRNGIRNAEF
VVGKAEEQFTKWQAAGLEPDVVIVDPPRKGLAESLIEATGKMAPRKVIYVSCNPATLVRD
IQRFGERGYHVVKPIQPVDQFPQTTHVESVTVLERTEK
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgaaggttcaaataccagtacataagaacaacgattaccaggcagaagtgaccgacctg
acctacgagggcaatggggtcgttaaggttgacgacttcccaatcttcttgcccaacgcc
ttaccgggggaaaagattaccgtgcgggtgaccaaggtagcccgccactttgcctggggc
cgggtgatggaatggcagagtaagagcccggaccgggtcgacgtcaaagataagaagtat
attcagacggggattgcacctctggggcacctgaagtatgcggctcagctgaagtttaag
cagcaccagattaaagaacttctggaaaaggcccacctgggagatatcgaagtcctgcca
acgatggggatggaccgaccttaccactaccggaataaggcccaagtcccggtcaagatg
gtgcgcggccagctgcagactggcttttacaagcgggggagccataccctggtaccgatt
gaggacttctatattcaagacccgcagattgataaagcaatcgttgtggtccgtgacctc
ttacggaagtaccatgtgactccgtatgacgagcggacgggcaagggcgtcattcgaacg
gtgatggtgcgtcgtggttactacagccatgaggtgatggtcgttttggtcaccaacacg
aagcggctcccgatggctaaggagattgtggccggtatcgtggccggcgtgccggaagtg
aagagcattgtccagaatattaatgacaagaagacgaaccgcctgctaggtgaccgtgat
cagaccttgtggggtgccgacgagatccatgaccagttactggggattgactttgctatt
tcgccgctgtcgttttaccaggtcaacccgcaacagacggagcgcctctaccagactgcc
attgataatgccggtctggatggtagtcagacggtgattgacgcctactgcgggattggg
acgatttccttagccgtggccaagcatgctaagcaggtttatggggtggaaattgtgccc
gccgcgattgaagatgccaagcacaacgccaagcggaacggaattcggaatgcggaattc
gtggtcggtaaggcggaagaacaatttaccaagtggcaagcagcgggactggagccggac
gtagtgattgtggacccaccacgcaagggccttgcggaatctttaattgaggcgactggc
aagatggcaccacggaaagtgatttacgtttcctgcaatccggccaccctggtgcgggat
attcaacgtttcggtgagcggggctaccacgttgtcaagccaatccagcccgtcgaccag
ttcccacagacgacgcatgttgagagtgttactgtccttgaacgcacagaaaaatag
DBGET
integrated database retrieval system
