Limosilactobacillus panis: KZE55_07990
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Entry
KZE55_07990 CDS
T07939
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lpas
Limosilactobacillus panis
Pathway
lpas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KZE55_07990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpas03019
]
KZE55_07990
Messenger RNA biogenesis [BR:
lpas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KZE55_07990
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
EF_assoc_2
Motif
Other DBs
NCBI-ProteinID:
QZN92708
LinkDB
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Position
complement(1649874..1651715)
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AA seq
613 aa
AA seq
DB search
MAKLKIKNNEVAFYAMGGLGEIGKNMYCVQFQDEIVIIDCGVLFPEDELLGVDYVIQNYD
YLIENKDKIKGIFITHGHEDHIGGLPFFLQKVNVPIYAGPFAMSLIKGKLDEKHLLRNAE
LHEINEFDEAHFKKLWVSFFRTTHSIPDTLGVAVHTPQGTIIQTGDFKFDLTPVGHLPGP
NLQQMAKLGDEGVLLLTSDSTNAERPQFTKSERWVDIHIRRIFERIKGRIIFASFASNVY
RLREASDAAIAQGRKIAVFGRSMENAIAAGQELGYLNIPEDSLIDQNEINNYPPEKVLIM
CTGSQGEPMAALSRIAKGTHRQISIQQGDTVVFSSNPIPGNTTSVNSLINKLEEDGANVI
HGYVNNIHTSGHGGQIDEEFMLRLMKPKFFAPVHGEYRMQKIHTKLAEMTGVPKKNTFIL
ANGDVLALTKDSCRLADHIDSVSDVYIDGRDAGDTVGNPEIRERRLLSEEGVVTAIAVVD
LKDYQIVAGPDIVSRGFVYMHESQELIKAANHEVFWAILNTFKNHKHVDQRALNRIIVSR
LQKLLFERTGRRPVIIPMITILNGDNRAENRHYRHPNHRNNNKQNKEKRSQQHSEKGKQH
NKQDHHKKETVKA
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaattaaaaattaagaataatgaagttgccttttacgccatggggggccttggc
gaaattggtaagaacatgtactgtgttcagttccaagacgagattgtcatcattgactgt
ggggtccttttcccagaagacgagctgttaggggtcgactacgttatccaaaattacgac
tacctgattgaaaacaaggataagattaaaggaatcttcatcacccacggtcacgaagac
cacattgggggattaccgttcttcttgcaaaaggtaaacgtgccgatctacgctggcccg
tttgcaatgtcattgattaaggggaagttggacgaaaagcacctcttacgaaatgcggaa
cttcacgagattaacgaattcgatgaagctcacttcaagaaactctgggtcagcttcttc
cggacgacccactcaattccggataccctcggggttgcggttcacactccccagggaacg
atcattcaaaccggggactttaaatttgacttaactccggttggccacttaccgggtcct
aaccttcagcagatggctaagctcggtgacgaaggcgtccttttgctgacatctgatagt
acgaatgccgaacgtccccagtttactaagtcggaaaggtgggttgatatccacatccga
cggatcttcgaacgaatcaaggggcggattatctttgcctcgtttgcttcaaatgtttac
cggctgcgggaagcatcggatgcagccattgctcagggtcgaaagattgccgtctttgga
cggagcatggaaaatgcaatcgcggcgggccaggagcttggttacctcaatattcctgag
gactccctgattgatcaaaatgagattaacaactacccaccggagaaggttctgattatg
tgtactggatcccagggtgaaccaatggcggcactgagccgaattgctaagggtacccac
cgacaaatcagtatccaacagggggacacggttgtcttttccagtaacccaattccgggg
aacaccactagtgttaattccctgatcaataaattggaagaagacggtgctaatgttatc
cacggttacgttaacaacatccacacctctggtcacggtggccaaattgatgaagaattt
atgctgcggttgatgaagccaaagtttttcgctccagttcatggcgaataccggatgcag
aaaattcacactaagctggcagaaatgaccggagtgccgaagaagaataccttcatcttg
gcaaatggtgacgtcttggccttgacaaaggatagttgccgattggctgaccacattgac
agtgtcagcgatgtatacatcgatggtcgtgacgcgggtgatacagttggtaacccagaa
atccgtgaacggcgcctactttcggaagaaggggtggtcacggcaattgcggttgttgac
ttaaaggactaccagattgttgctggtccggacattgtttcccgaggcttcgtttacatg
catgaatctcaagaattgattaaggctgctaatcatgaagtcttctgggctatccttaac
acctttaagaaccataagcatgttgaccaacgggccctcaaccggataatcgttagtcgg
ctacagaagttactctttgaaaggaccggacggcgaccagtaattattccgatgattacg
attcttaacggtgacaatcgggcagaaaaccgccactaccgtcaccctaaccatcgtaat
aacaataagcaaaacaaggaaaaacgctcccaacaacatagtgaaaagggaaagcaacat
aacaagcaggaccaccataaaaaggaaactgtaaaagcttag
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