Lacipirellula parvula: PLANPX_0208
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Entry
PLANPX_0208 CDS
T06590
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
lpav
Lacipirellula parvula
Pathway
lpav03030
DNA replication
lpav03430
Mismatch repair
lpav03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lpav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PLANPX_0208
03430 Mismatch repair
PLANPX_0208
03440 Homologous recombination
PLANPX_0208
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lpav03032
]
PLANPX_0208
03400 DNA repair and recombination proteins [BR:
lpav03400
]
PLANPX_0208
Enzymes [BR:
lpav01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PLANPX_0208
DNA replication proteins [BR:
lpav03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PLANPX_0208
DNA repair and recombination proteins [BR:
lpav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PLANPX_0208
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
PHP_C
Motif
Other DBs
NCBI-ProteinID:
BBO30596
UniProt:
A0A5K7X8G5
LinkDB
All DBs
Position
248402..252010
Genome browser
AA seq
1202 aa
AA seq
DB search
MSAPSFVHLHCHSHYSLLDGASPIKGLVNRAKELGMNALALTDHGNLYGALEFYKASKEA
GINPVLGYEAYVAPGSRFNKGGGLTSKEATYHLTLLAKNKTGFQNLVKMASRAYLEGFYH
KPRIDRALLEEFSEGIICLSGCVSGEFSRALLASSSGKVGGGLVEEQIEKARGIASWFHN
VFGDRYFIEIQDNGLEIQRLAKEAAIEVANRMGLPLVATSDAHYVRQDDAVAQDVLLCIN
TGKFRTDTNRMKMEGDQFFLRSADEMFAALSDQSEALARSQQIADSVDIDLELGKRYFPT
FEVPKETNSQDYLRQLVLDGLKERYANKPERWAVAGQLSQVVMDRVDRELGVINKLGFYD
YFLIVWDFVRFAVESDIPCTARGSGVGSLVCYALKLSHVCPLDYDLLFERFLDESRLEAP
DIDIDFCKERRSEVIDYVKRKYGDANVAQIGTFGTLAARAAIRDVGRTLGMPIFRVDQVV
GMVPDQLGISIKKALETSDELKKTYDGDHEVRELIDLAQKIEGLARNVGTHAAAVVIAAR
PVDEFVPLQHVKGKTDVITQWAMGDVEAAGLLKMDFLGLRNLTILASSVKLIEKARGVRI
DPYAFPLDDKPTFQLLCRGETKGIFQLESGGIRDLLQRMKPDHFRDIIATNALYRPGPLE
GGMVDQYIEVKHGRKPAEYPHEVTEEILAETHGVMVYQEQVMRILNKLGGIQLSNAYTCI
KAISKKKLPMIAKYKQEFIDGAKSLGLDTKKSDELFSMIEKFAGYGFNKSHSTAYALIAY
MTAYLKAHYPVEFMAALLSCDISGRNFKSKDPLVEHIEDCRRMNIDVLPPNVNQGDPEFT
VEDGKIIFGLSAIKSCGGAAAEGIAAERKKNGPYTSIFDFCERVDGSLCNRAAIESLIKA
GAFDKLGGHRAQYMAVLDKALQAGASIAADRKAGQKGFSFDDDDEEEQAATVASLPEVNV
WTEKEQLTQEKEVLGYYLSSHPLAEFEQTLKTFCTHSSKTIGALAHRDEVLLGGMIAAIK
FSHTKNPRPGSVNTKYAMWDLEDMDGITRCILWPEQFAICGEHVVADAILGVRGKIDRRP
GAEEVNLIVDELIPLSELSERYATGVMIRVREAEHGQRGLEQLREILRGYPGNKKLKLRL
DLAAGGQVWLDSKWPGLDLNPELRERVEGLLGPGSLALQATRPKMQTGAEQGRGRQRQPA
RT
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
ttgtccgcaccgtcgttcgtccatcttcattgccatagccattacagcctcctcgacggc
gccagcccgatcaaagggctcgtcaatcgggccaaagagctggggatgaacgccctcgcg
ctcactgaccacggcaatctctacggggcgctcgagttctacaaagcgtcaaaggaagcg
ggcatcaatccggtgcttggctacgaagcctacgtcgcccccggcagccggttcaacaag
gggggcggactcaccagcaaggaagcgacctaccacctcacgctgctcgcgaagaacaaa
acgggcttccagaacctcgtgaagatggcgagtcgcgcctatctcgagggcttctatcac
aagcctcgcatcgatcgcgcgctcctcgaagaattttccgaagggatcatctgcctcagc
ggttgcgtcagcggcgagttcagccgcgcgctgctcgccagcagctccggcaaagtcggc
ggcggactcgttgaagagcaaatcgaaaaggcccgcggcattgcttcgtggttccataac
gttttcggcgatcgctacttcatcgagatccaggacaacggcctggagattcagcggctc
gccaaagaggcggccatcgaagttgccaaccgcatgggcctgccgctcgtggccaccagc
gacgcccactacgtgcggcaagacgacgccgtcgcgcaagacgtgctcctctgcatcaac
acgggcaagttccgcaccgacacgaatcgcatgaagatggagggagaccagttcttcctt
cgcagtgcggacgaaatgtttgccgcgctttccgatcagtcggaagccctcgcccgttcg
cagcagatcgccgactcggtcgacatcgaccttgaactcggcaagcggtacttcccgacg
ttcgaagttcccaaagaaaccaactcgcaagattatctgcggcaactcgtcctcgacggt
ctgaaagagcgttacgccaacaagcccgagcgctgggcggtcgcaggccagctctcgcaa
gtcgtgatggaccgcgtcgaccgtgaactcggcgtcatcaacaagctcggcttctacgat
tacttcctcatcgtgtgggacttcgttcgcttcgccgtcgaaagcgacatcccctgcacg
gcgagaggttcgggcgtcggttcgctcgtctgctacgcgctgaaactgagtcacgtctgc
ccgctcgactacgacttgctgttcgagcggttcctcgacgaaagtcgacttgaggcgccc
gatatcgacatcgacttctgcaaggaacgccgcagcgaagtcatcgactacgtcaaacgg
aagtacggcgacgccaacgtggcgcagattggcacgttcggcacgctcgccgcgcgggcc
gcgatccgcgacgtcggccgtacgctcggcatgccgattttccgcgtcgaccaggtcgtc
ggcatggtgcccgaccagctcggcatttcgatcaagaaagcgctcgaaacgagcgacgag
cttaagaagacctacgacggcgatcacgaagttcgcgagctgatcgatctcgcgcaaaag
atcgaaggcctcgcccgcaacgtcggcacccatgccgcggcggtggtgatcgcggcgcgg
ccggtcgacgagttcgtcccgctgcagcacgtgaaaggcaagaccgacgtcatcacccaa
tgggcgatgggcgacgtcgaagcggccggcctgctaaagatggacttcctcggcctccgc
aacctgacgatcctcgcgagcagcgtgaagttgatcgaaaaagcccgcggcgtgcggatc
gatccgtacgccttcccgctcgacgacaagccgaccttccagttgctctgtcgcggcgaa
acgaagggcatcttccagctcgaatccggcggcattcgcgacttgcttcagcggatgaag
cccgaccacttccgcgacatcatcgccacgaatgccctctatcgcccaggtccgctcgaa
ggcggcatggtcgatcagtacatcgaggtgaagcatggccgcaagccggccgagtatccg
cacgaggtgaccgaagagattctcgccgaaacgcacggcgtgatggtctaccaagaacag
gtcatgcggattctcaacaagctgggcggcatccagctctccaacgcatacacctgcatt
aaggcgatcagcaagaaaaagctgccgatgatcgccaagtacaaacaagagttcatcgac
ggcgccaagtcgctcggcctcgatacgaagaagtcggatgaactcttcagcatgatcgag
aagttcgccggctacggttttaacaagagccattcgaccgcgtacgcactcatcgcgtac
atgacggcgtacctgaaggcgcactatccggtcgagttcatggcggcgctattgtcgtgc
gatatctccggccgcaatttcaagagcaaggatccgctcgtcgaacatatcgaagattgt
cggcggatgaacatcgacgtgctgccgccaaacgtgaaccagggcgatcccgagtttact
gtcgaggatggcaagatcatcttcggcctcagcgcaatcaagtcatgtggcggcgccgcg
gcggaagggatcgccgccgagcggaagaagaacggcccctacacgagcattttcgatttt
tgcgaacgggtcgacggctcgctttgcaatcgtgcggcgatcgaatcgctcatcaaggcg
ggcgccttcgacaagctcggcggccaccgcgcccagtacatggcagtgctcgacaaggcg
ctgcaagccggggcgtcaatcgctgcggaccgtaaggcgggacaaaaggggttcagcttt
gacgatgacgacgaagaagagcaagccgcgacggtggcgtcgctccccgaagtaaacgtc
tggaccgagaaggagcagctcacacaagagaaggaagtgctgggttactatctctccagc
cacccgctcgcggaattcgagcaaacgctcaaaaccttctgcacccattcgagcaaaacg
atcggcgccctcgctcaccgcgacgaggtgctgcttggcggcatgatcgcggcgatcaag
ttctcgcacacgaagaacccgcggcccggcagcgtcaacacgaagtacgcgatgtgggat
cttgaggacatggacggcatcacccgctgcatcctctggcccgaacagttcgccatctgc
ggcgagcatgtcgtcgccgatgcgatcctcggcgtccgcggcaagatcgatcgccgtccc
ggcgccgaagaagtgaacctcatcgtcgacgaactcatcccgctcagcgaactgtcggag
cgctacgccaccggcgtgatgatccgcgttcgcgaagccgagcacggccagcgcgggctg
gaacaactccgcgaaatcctccgcggctatcccggcaataagaagctgaagctgcggctc
gacctcgccgccggcgggcaggtgtggctcgacagcaaatggccggggctcgaccttaat
cccgagttacgcgagcgggtcgaaggcttgctcggtcccggtagcctcgcactgcaagcg
acgcggccaaagatgcaaacgggcgccgagcaaggccgcggccggcaacgccaaccagcg
cggacgtag
DBGET
integrated database retrieval system
