Lacipirellula parvula: PLANPX_1413
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Entry
PLANPX_1413 CDS
T06590
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
lpav
Lacipirellula parvula
Pathway
lpav02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lpav00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PLANPX_1413
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpav03021
]
PLANPX_1413
Transcription machinery [BR:
lpav03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PLANPX_1413
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r1_2
KORA
Sigma70_r4_2
DUF6819
HNH_repeat
Motif
Other DBs
NCBI-ProteinID:
BBO31801
UniProt:
A0A5K7XAM9
LinkDB
All DBs
Position
complement(1607470..1608342)
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AA seq
290 aa
AA seq
DB search
MPATTRKRKVSSAVQTPLETYLREINETALLNAREEKELATSIGEGDLAARDRMVRANLR
LVVNIARGYSGKGLALQDLIEEGNLGLLRAVEGFDPAMGTRFSTYASYWIKQSIKRALIN
TGKTIRIPAYMVELLSKWRRATARLTEELDRTPTPEEIARVLGLPKKKLPIIKKAIKIYN
ATPQTDQTEAGWTLGDMVMDERQQAPDDALVESDSLRHVLAMLQTMDQREATVLRMRFGL
DGYEPRTLKEIGEELGLTRERVRQIETEALNKMADSIEHPPAGMFADDND
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
atgccagccaccacccgcaagcgtaaagtttcctcagccgttcaaacgccgctggaaacg
tacctgcgcgagattaacgagacggcactcctcaacgctcgcgaggagaaagaactcgcc
acgagcattggcgaaggcgacttggccgctcgcgaccggatggtgcgcgctaacctgcgg
ctcgtggtcaacatcgcccgcggctactccggcaaaggcctcgccctgcaggacctcatc
gaggagggcaacctggggctgctgcgcgccgtcgagggcttcgacccggcgatgggaacg
cggttcagcacctacgccagctactggatcaagcaatcgatcaagcgggcgctgatcaac
accggcaagaccatccgcatcccggcgtacatggtcgaactgctgtcgaagtggcggcga
gccaccgcgcggctgacggaagagctcgatcgcaccccgacgcctgaagaaatcgcccgc
gtcctcggcctgccgaagaaaaagctgccgatcattaagaaggcgatcaagatctacaac
gccaccccccagaccgaccagaccgaagcgggctggacgctgggcgacatggtgatggac
gaacggcaacaagcccccgacgacgcgctcgtcgaaagcgacagcctgcggcatgtgctc
gcgatgctccaaacgatggaccaacgcgaagcgaccgtcctgcggatgcggttcggcctc
gatggctacgaaccccggacgctcaaagaaatcggcgaagaactcggcctgacccgcgaa
cgcgtgcggcaaatcgagaccgaagccctcaacaagatggccgacagcatcgaacacccg
ccggcgggcatgttcgccgacgacaacgactaa
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