Lacipirellula parvula: PLANPX_4740
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Entry
PLANPX_4740 CDS
T06590
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
lpav
Lacipirellula parvula
Brite
KEGG Orthology (KO) [BR:
lpav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lpav03016
]
PLANPX_4740
Enzymes [BR:
lpav01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
PLANPX_4740
Transfer RNA biogenesis [BR:
lpav03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
PLANPX_4740
BRITE hierarchy
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Ortholog
Paralog
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GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
BBO35128
UniProt:
A0A5K7XF46
LinkDB
All DBs
Position
complement(5294103..5295284)
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AA seq
393 aa
AA seq
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MPAPIVTKQRDLDELSERLQAAPIIGFDTEFVSEDTFHPELCLIQVVSPDEMAVIDPQTV
DVLPFWKAVAAREKTTVFHAGREELSFMLRAVGSIPQRSFDVQFAAGFCSNEFPASYGSV
VGKFLGKQPMKGEQRTDWRRRPLTDAQINYALEDVRYLLPLFERLTEILNKRGRLMWLKD
ELASWQQSIVEAQDRKDWRRVSGIGTLNARNLAVVRELWLWRQEEARKLNQPPKRLLRDD
LLVEIAKRKTDQPDQILAIRGLQRSDLRRKASELADCVRRGLDAPLERGERLTQREPPPQ
LNLLGQFLTPALTSICRQNEVAASMVGTATDVRELIAYRYGFGGIDPTETPVLLKGWRAD
LVGNLLDDLLSGKKSIRIADPKNEDPLAFDAVK
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgcccccatcgtcaccaaacaacgcgatctcgacgagctctccgagcgtctccag
gccgccccgattattggattcgacaccgagttcgtctccgaagatacgtttcatcccgag
ctttgcctgattcaggtcgtgagccccgacgagatggcggtgatcgacccgcagaccgtc
gacgttttgccgttctggaaggcggttgccgcgcgggagaagacgacagttttccatgcc
gggcgtgaggaactcagcttcatgctccgtgccgtggggtcgatcccgcagcggagcttc
gacgtccagttcgccgccgggttctgctcaaacgagttccccgcctcctacggatcggtc
gtcggcaagtttctcggcaagcagccgatgaagggggagcagcgaaccgactggcgccgc
cggccgttgaccgacgcccaaatcaactacgcgcttgaagacgtccgctacctgctgccg
ctgttcgagcggctgacggagatcctcaacaagcgcggccggctgatgtggctcaaagac
gagcttgccagttggcagcaatcgatcgtcgaagcccaggaccgcaaagactggcggcgg
gtctcggggatcggcacgctcaacgcccgcaacctcgcggtcgttcgcgagctgtggcta
tggcggcaagaggaagcccggaagctcaaccaacccccgaaacgcttgttgcgagacgat
ctcctcgtcgaaatcgctaagcggaagaccgatcagcctgatcagattctcgccatccgc
ggattgcagcggagcgatctccgccgtaaagcgagtgaactggctgactgcgtgcggcgc
gggcttgatgcgccgctcgaacggggcgagcgcctgacgcagcgggaaccgccgccgcag
ctcaacctgctggggcagttcctcacgcctgccctcacgtccatctgccgccagaacgaa
gttgccgcgagcatggtcggcacggcgaccgacgtgcgcgagttaattgcctatcgctac
ggcttcggcggcatcgacccgactgaaacgcctgtcttgctgaaaggctggcgagctgac
ctcgtcggcaacttgcttgatgatctgctcagcggcaagaagtcgatccgcatcgccgat
cccaagaacgaagacccgctcgccttcgacgccgtcaagtag
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