Lacipirellula parvula: PLANPX_5797
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Entry
PLANPX_5797 CDS
T06590
Name
(GenBank) DEAD-box ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lpav
Lacipirellula parvula
Pathway
lpav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PLANPX_5797
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpav03019
]
PLANPX_5797
03009 Ribosome biogenesis [BR:
lpav03009
]
PLANPX_5797
Enzymes [BR:
lpav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PLANPX_5797
Messenger RNA biogenesis [BR:
lpav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PLANPX_5797
Ribosome biogenesis [BR:
lpav03009
]
Prokaryotic type
rRNA helicases
PLANPX_5797
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BBO36185
UniProt:
A0A5K7XIF2
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All DBs
Position
6475894..6477219
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AA seq
441 aa
AA seq
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MAETLDPADEATAPAPTARFTELGLSDTMLAALEHVGYEVPSPVQAGIIPRILAGADVLG
QARTGTGKTASFGIPILEKLDQPGRNHQPRALVMVPTRELAVQVRDEIERLSHGRKVRAT
AIYGGKPLKTQIARLQKGADIVIGTPGRILDHLGRGTLLLDQLEFVVLDEADRMLDIGFR
PDIEKILRRCPAKRQTLLLSATVAPAIERLAQRYMIEPEIMDFSPKGKSVDTIEQRYFTV
DDSRKFDLLIRLLKREQPPQTIIFCRTKRGCDKVHRKLSQKIHGVECMHGDMAQNVRDRV
MKSFRAEECSILVATDVVGRGIDVSSVSHIINFDMPQSSDDYVHRVGRTGRMGREGIAFT
FVTPEQGIELTRIEMLINKLLNRDEIEGFVTVAQAAPPQDGHANGAAGSTPGAPAEPEGP
PKPASPPPPGKRAPRRHRRGL
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
ttggctgaaactctcgaccccgccgacgaagcgaccgctcccgctccgaccgcccgcttc
accgaactcggcctctccgacacgatgctcgctgcgcttgagcacgtcggctacgaagtc
cccagccccgtccaggccggcatcatcccgcgaattctcgccggggctgacgtgctcggc
caggctcgcaccggcaccggcaagaccgcctcgttcggcatcccgatcctcgagaagctc
gatcaacccggccgcaaccaccagccccgcgccttggtgatggttcccacccgcgaactc
gccgtgcaggttcgcgacgagatcgaacgcctgtcgcatggtcgcaaggtccgcgccacc
gccatctacggcggcaagccgctcaagacgcagatcgcccgcctccagaaaggcgccgac
atcgtcatcggcaccccgggccgcatccttgaccatctcggccgcggcacgctgctgctc
gatcagctcgaattcgtcgtcctcgacgaagccgaccgcatgctcgacatcggcttccgc
cccgacatcgaaaaaatcctccgccgctgcccggccaaacggcagacgttgctgctgagc
gccacggtcgccccggcgatcgaacgcctcgcccagcgttatatgatcgagccggagatc
atggacttctcccccaaggggaagtcggtcgacacgatcgagcagcgctacttcaccgtc
gacgattcgcggaagttcgacctgctcatccgcctactgaagcgcgagcaaccgccgcag
acgatcatcttctgccgcacgaagcgcggctgcgacaaggtccaccgcaagctgtcgcag
aagatccacggcgtcgagtgcatgcacggcgacatggcccagaacgtccgcgaccgcgtg
atgaagtcattccgcgccgaggaatgttcgatcctggtggcgaccgacgtcgtcggccgc
ggcatcgacgtcagcagcgtctcgcacatcatcaacttcgacatgccgcagtcgtcggac
gattacgttcatcgcgtcggccgcaccggccgcatgggccgcgaaggaatcgcgttcacg
ttcgttacgcctgagcaagggatcgaactgacgcggatcgagatgctgatcaacaagctg
ctgaaccgcgacgaaatcgaaggcttcgtcacggtcgcccaggcggccccgccgcaagat
ggccacgctaacggcgctgccggctccacgccgggcgcgcccgccgaaccggaaggtccg
ccgaagccagcctccccgccgccgccaggcaagcgggcgccgcgccgtcatcgtcgcggg
ctgtaa
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