Lacipirellula parvula: PLANPX_5867
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Entry
PLANPX_5867 CDS
T06590
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
lpav
Lacipirellula parvula
Pathway
lpav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PLANPX_5867
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpav03019
]
PLANPX_5867
03009 Ribosome biogenesis [BR:
lpav03009
]
PLANPX_5867
Enzymes [BR:
lpav01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PLANPX_5867
Messenger RNA biogenesis [BR:
lpav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PLANPX_5867
Ribosome biogenesis [BR:
lpav03009
]
Prokaryotic type
rRNA processing factors
PLANPX_5867
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Antiterm
Trehalase
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
BBO36255
UniProt:
A0A5K7XIL1
LinkDB
All DBs
Position
complement(6546265..6547974)
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AA seq
569 aa
AA seq
DB search
MKQEMLINVAQPEECRIAICEDGVLEELYIERSSQDNYVGNIYKGKIVNLEPSIQAAFVD
FGVGRNGFLHISDVEPQYFRQGGYDPDVEISPGGPPRRDERDQHDDEFGHDDDDDNEDDD
LEEVGDNGRATRRGPNGGGGGRTAQKRMRPGVRPRIKPPIQEIFRRGDEVLVQVIKEGIG
TKGPTLSTYISIPGRYLVLMPALGRIGVSRKIEDDDARRRLRDILRELNPPKGLGFIVRT
AGTDRTKKELSRDLAYLVRLWKVIVRRIKKAPAPCDIYQESDMIIRTIRDIFTGDVDGIY
IDQAEAYERAKEFLQFVMPRYVSRLKLYEGKEPLFHKYKLDDEIARINQRKVPLRGGGSL
VIDQTEALVAIDVNSGSFRTDGGAEESAFQLNQIAAREIARQLRLRDLGGVVVNDFIDMR
KDRHRRIVERTLRDAVRRDRARTKILRISPFGLIEMTRQRIRPSLKRSVYKECPACAGSG
LVKSAESMAIEVIRKLIMCAQHASVARIAVTVEEEVASYINNRKRRELTRMEDEHTVQVL
VISREDLSPEFLKFDCEDASGREVRIEGM
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaggagatgctgattaacgtcgcgcagccggaagagtgccggattgccatctgc
gaagacggggttttagaagagctgtacatcgagcggagtagccaagacaactacgtcggc
aacatttacaaggggaagatcgtcaacctggagcccagcatccaggcggcgttcgtcgac
tttggcgtcggccgcaacggcttcttgcacatcagcgacgtcgagccgcaatacttccgc
caaggcgggtacgatcccgacgtcgagatctcgcccggcggaccgccgcgtcgcgacgag
cgcgaccagcacgacgacgagttcggccatgatgacgatgacgacaacgaagacgacgac
ttggaagaagtcggcgacaacggccgcgccacccgtcgtgggccgaatggcggcggcggt
ggtcgcaccgcgcagaaacgcatgcgtcccggcgtgcggccgcgcatcaagccgccgatc
caagagatcttccgccgcggcgacgaagtcctcgtccaggtgatcaaagaaggcatcggc
accaaggggccgacgctctccacgtacatcagcatcccgggtcggtacctggtgctcatg
ccggcgctcggccgcatcggcgtgtcgcgcaagatcgaagacgacgacgcccgccgtcgc
cttcgcgatatcctccgcgaactgaacccgccgaaaggcctcggcttcattgttcgcacc
gccggcaccgaccggacgaagaaggaactgtcgcgcgacctcgcgtacctcgtgcgactc
tggaaggtgatcgtccgccggatcaagaaagccccggcgccgtgcgacatctaccaagaa
agcgacatgatcatccggacgatccgtgacatcttcacgggcgacgtcgacggcatctac
atcgatcaggccgaagcgtacgaacgggcgaaggagttcctgcagttcgtgatgccgcgc
tatgtcagccggctcaagctctacgaaggtaaggaaccgctgttccataagtacaagctc
gacgacgagatcgcgcggatcaaccaacgcaaagtcccgctgcgaggcggggggtcgctg
gtgatcgaccagaccgaagccttggtggcgatcgacgtcaacagcggcagcttccgcacc
gacggcggcgcggaagagtcggccttccagttgaaccaaatcgccgctcgcgaaatcgcc
cgccagttgcggctccgcgatctcggcggcgtcgtggtgaacgacttcatcgacatgcgc
aaagatcgccatcgccgcatcgttgagcgaaccctccgcgacgcggtccgtcgcgatcgc
gcccgcacgaagatcttgcgcatcagcccgttcggcctcatcgaaatgacgcggcagcgc
attcggccgagcctcaagcggagcgtctacaaggaatgccccgcgtgcgccggttcgggc
ctcgtgaagagcgccgagagcatggcgatcgaagtgatccgcaaactgatcatgtgcgcc
caacacgccagcgtcgcgcggatcgcggtgacggtcgaagaggaagtggcgagctatatc
aacaaccggaagcgtcgcgaactgacgcggatggaagacgagcacaccgtgcaagtgttg
gtgatcagccgcgaagatctctcgccggagttcctcaagttcgactgcgaagacgccagc
gggcgtgaggttcgcatcgaggggatgtag
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