Lacipirellula parvula: PLANPX_6147
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Entry
PLANPX_6147 CDS
T06590
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lpav
Lacipirellula parvula
Pathway
lpav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PLANPX_6147
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpav03019
]
PLANPX_6147
Enzymes [BR:
lpav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PLANPX_6147
Messenger RNA biogenesis [BR:
lpav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PLANPX_6147
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
SNF2-rel_dom
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
BBO36535
UniProt:
A0A5K7XJH4
LinkDB
All DBs
Position
6854824..6856533
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AA seq
569 aa
AA seq
DB search
MNLRMVKFDSLNLGPALLRAIADKGYEIATPIQADAIPPILEGRDLIGCAQTGTGKTAAF
ALPTIHRILVALQKERDEAAKANGQPTDQPEAAEAPAEPQDSRRQGNRADRRAGRHQTSR
RPQARRKTRALVLAPTRELVSQIAASFAVYGKHTALRHAVIYGGVGQGPQVKALQHGSDV
IIATPGRLLDLMNQGHVDLSKIESLILDEADQMLDMGFIPDLKRIISKVPKQRQTLMFSA
TMPQAIRELAHEWLEFPVSVQTAPVATPAEKVDQTVYFVSKDGKIRLLEQWLQNTANSRT
IVFSRTKHGADKIVKYLCKSKINAAAIHGNKSQNFRERTLQQFKSNRPPVLVATDIAARG
LDIKEVSHVINYDIPETPETYVHRIGRTARAGATGSAISFCSAEEIRYFRGIEKLTRRRI
EVGVGHEDLTFTAPPAPVDEPRPQRGGQRGRRGGPGGPGGGGNRRSRFSKSNGGGYGNNN
GGGSNGAPAAGHATGNGAGGARPAGGRRFNGANGASRPKPPRPPKRRTDGRAADSEPLTL
DGPAPANNKPPATGSGRRPKRRKKVTSKL
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgaatttgagaatggttaagttcgattcactcaaccttggtccggctctgcttcgcgcg
atcgccgacaaaggttacgagatcgcgacgccgattcaggctgatgcgattcccccgatc
ctcgaaggtcgcgacctgatcggttgcgcccagaccggcaccggcaagacggccgctttc
gcgctgccgacaatccaccgtattctcgtcgcgctccaaaaagaacgcgacgaagcggcc
aaggccaacggtcaaccgaccgaccaacccgaagcggcggaagctcctgccgaacctcaa
gattcgcgccgccaaggcaatcgggccgatcgccgcgccggtcgccaccaaacttcacgc
cgtccgcaagctcgtcgcaagacccgcgccctggtgctcgctccgacccgcgaactcgtt
tcgcaaatcgcggccagcttcgctgtctacggcaagcacaccgcgctgcgtcatgccgtg
atctacggcggcgtcggccagggcccgcaagtgaaggccctgcaacacggttctgacgtg
atcatcgccacgccgggccgcttgctcgacctgatgaaccaagggcacgttgatctcagc
aagatcgagagcctgattctcgacgaagccgatcaaatgctcgacatgggcttcatcccc
gacctgaagcggatcatctcgaaggtgccgaagcagcgccaaacgctgatgttctcggcc
acgatgccgcaagcgattcgcgaactcgctcacgagtggcttgagttccccgtgagcgtg
caaaccgctccggtcgcgacgccggccgagaaggtcgaccaaacggtttacttcgtctcg
aaggacggcaagattcgcctcctcgagcagtggctgcagaacacagcgaacagccgcacg
atcgtcttctcgcgcaccaagcacggggccgacaagatcgtgaagtacctctgcaagagc
aagatcaacgccgcggcgattcacggcaacaaaagccagaacttccgcgaacggacgctg
cagcagttcaagtcgaaccgtccgccggtgttggtggcgaccgacatcgccgctcgcggt
ctcgacatcaaagaggtgtcgcacgtcattaattacgacatcccggaaaccccggaaacc
tacgtgcaccgcatcggtcgcacggctcgcgccggcgccacgggttcagcgatctcgttc
tgctcggcggaagagattcgctacttccgcggcatcgagaagttgacccgtcggcggatc
gaagtcggcgtcggtcacgaagaccttacgttcaccgctcccccggccccggtcgacgaa
ccacgcccgcagcgtggcggccaacgtggccgtcgcggcggaccgggcggtcctggcggc
ggcggtaatcgtcgttcgcggttcagcaagtcgaacggcggcggctacggcaataacaat
ggcggcggtagcaacggcgccccggccgctggtcacgccactggcaacggcgctggcgga
gcccgcccagctggcggtcgtcgtttcaacggcgcgaatggcgccagccgtccgaagcca
cctcgtccgccgaagcgtcgcaccgacggtcgcgccgccgacagcgagccgctgacgctc
gacggtcccgcgcccgccaacaacaagccgccggccaccggcagcggccgtcgccccaag
cgccgcaagaaggtgacttcgaagctgtaa
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