Lactiplantibacillus plantarum B21: SH83_04240
Help
Entry
SH83_04240 CDS
T03680
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lpb
Lactiplantibacillus plantarum B21
Pathway
lpb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lpb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SH83_04240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpb03021
]
SH83_04240
03400 DNA repair and recombination proteins [BR:
lpb03400
]
SH83_04240
Enzymes [BR:
lpb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SH83_04240
Transcription machinery [BR:
lpb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SH83_04240
DNA repair and recombination proteins [BR:
lpb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SH83_04240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AJO73588
UniProt:
A0A165C8D8
LinkDB
All DBs
Position
939449..943090
Genome browser
AA seq
1213 aa
AA seq
DB search
MIDVNKFESMQIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFDERIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDM
SPRALEEIIYFASYVVIESGNTPLEKKQLLSEREYREKKAQYGNEFEAAMGAEAIKRLLN
NVDLEKEARDLKETLKDASGQKRTRAVRRLDIIEAFVTSGNEPAWMVMDAIPVIPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVAGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVGPFLKMNQMGLPRQ
MALELFKPFIMKELVKRELASNIKNAKRKIEHADDDVWGVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPVLVSGKAMRLHPLACEAYNADFDGDQMAIHVPLSDEAQAEARLLMLAAHHIL
APKDGKPVVTPSQDMVIGNYYLTTEEIGREGEGMIFKDLNEAQKAYQSGYVHLHSRVGIQ
VSSMPDKPFTDDQKQAVLVTTVGKAIFNNILPGKFPYLNEPTNDNLIAGTPDKYFLKPGE
DIHQFLDAQEIIPPFKKGFLADIIAEVYKQYHVTATSLLLDRMKDLGYNISTKSGLTVGV
ADITGLKEKPAIIAEAHKQVNTISKQFRRGLITDDERYERVIGVWNDAKDQIQQKLIESF
NADNPIFMMSDSGARGNISNFTQLAGMRGLMAAPNGKIMELPILSNFREGLSVLEMFIST
HGARKGMTDTALKTANSGYLTRRLVDVAQDVIVREKDCGTDRGLRIHAIMEGNEVIEPLY
DRILGRYTMKTVFDPETHDEIVGNNVLIDEDLAHKIVDAGVTEVTIRSAFTCNTKHGVCE
HCYGRNMATGDEVEVGEAVGTVAAQSIGEPGTQLTMRNFHTGGVAGDDITQGLPRVQEIV
ESRNPKGRAEISEVTGTVELIEENPAERTKEVTVKGETDTRTYTLPLTARMAVSEGDFIH
RGAALNIGSIDPKQLIQVRDVLSTENYLLREVQKVYRMQGVEIGDKHVEIMIRQMLRKVR
VMDPGDTDVLPGTLMDIADFKDENYKTLIAGGIPATSRPVILGITKAALETNSFLSAASF
QETTRVLTDAAIRGKNDPLIGLKENVIIGKIIPAGTGMPVYRHIKPKEVGNVADGVYSIS
DLEKQMQEQDASK
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgatgtcaacaagtttgaaagcatgcaaatcggtctggcatccccagacaagatt
cgcagctggtcatatggcgaagtcaaaaagccagaaaccattaactaccggacattgaaa
cctgaaaaagacggtctgtttgacgaacggatttttggtcctactaaggattgggaatgt
gcttgtggtaaatacaaacggattcgttataagggtattgtctgtgaccgttgtggggtc
gaagtgactcgtagtaaagtccgtcgtgaacggatgggtcatatcgaacttgccgcacca
gttactcacatctggtactttaagggaattcctagccggatgggcttagtcttagacatg
agtccccgggcacttgaagaaatcatttacttcgcttcatacgtcgttatcgaatctggt
aatacgccacttgaaaagaagcaattactttctgaacgtgaataccgtgagaagaaggct
caatatggtaacgaatttgaagctgccatgggtgccgaagccatcaaacggttattgaat
aacgtggatcttgaaaaagaagcacgtgatttaaaggaaactctgaaggatgcttctggt
cagaagcggacccgggccgttcggcggcttgatatcatcgaagctttcgtgacatctggt
aacgaaccagcttggatggtaatggacgcaattccggttattcccccggacttacggcca
atggttcaattggaaggtggtcgttttgccacctctgacttgaacgacttgtaccggcgg
gttatcaaccgtaataaccggttgaaacgcttgttggacttaaatgcacctgggattatc
gtgcaaaacgaaaagcggatgttgcaagaagccgttgatgcgttgatcgataatggtcgt
cgtggccgtcccgttgctggtcctggtaaccggccattgaagtctctttcacacatgttg
aaagggaagcaagggcggttccgtcaaaacttacttggtaagcgggttgactattctggt
cgttcggttatcgatgttgggcctttcttgaagatgaaccaaatgggcttgccacgtcaa
atggcgttggaattgttcaaaccgtttatcatgaaggaattggttaaacgtgaattagct
tctaacatcaagaatgctaagcgaaagatcgaacatgccgatgacgatgtctggggtgtg
ttggaagacgtcatcaaggaacatcctgttctcttgaaccgcgcccctacgcttcaccgt
ttagggattcaagctttcgaacctgtcttggttagtggtaaagcgatgcggctccatcca
ttggcttgtgaagcttacaacgccgatttcgatggggaccaaatggctattcacgttcca
ctttcagatgaagcccaagctgaagcacggctcttaatgttggctgcccaccatattttg
gcgcctaaggacgggaaacccgttgttacgccatctcaagatatggttatcggtaactac
tacttgacgactgaagaaatcggtcgtgaaggcgaaggtatgatcttcaaggacttgaat
gaagcgcaaaaggcttaccaatcaggttatgtacatttgcatagccgggtcggcattcag
gtctcatcaatgcctgacaagccattcacggacgatcagaagcaagcagtcttagtcacg
acggttggtaaggcaatcttcaacaacattttgcctggcaagttcccttacttgaacgaa
ccaactaacgataacttgattgctggtacaccggacaagtatttcttgaagcctggtgaa
gatattcatcaattcttggatgcccaggaaatcattccaccattcaagaagggcttcttg
gccgacattatcgctgaagtttacaagcaatatcacgtgacagcaacgtcactcttgctt
gaccggatgaaggacttaggttacaacatttcaactaagtctggtttgacggttggggtt
gccgatattactggtttgaaagaaaaaccagcaattatcgccgaagcccataaacaagtt
aatacgatttcgaaacagttccgtcgtggtttaattactgatgatgaacgttatgaacgg
gtcattggtgtctggaacgacgctaaggaccaaatccaacaaaaactgattgaaagtttc
aacgcggataacccaatctttatgatgagtgattctggtgcgcgtggtaacatttcaaac
tttactcagttagctgggatgcgtggtttgatggctgcccctaacggtaagatcatggaa
ttaccaatcctttcaaacttccgtgaaggtttgtctgtcttggaaatgttcatttcaacc
cacggtgctcgtaaagggatgaccgatacggcgcttaagactgccaactcaggttacttg
actcggcgtctggttgatgtggctcaagatgttatcgttcgtgaaaaggattgtgggact
gaccgtgggttgcggattcacgcaatcatggaaggtaacgaagtcatcgaaccgttgtat
gaccggatcttaggtcgttacacgatgaagactgtctttgatcctgaaacgcatgatgaa
attgttggtaacaacgtcttgatcgacgaagacttagctcataaaatcgttgatgctggt
gtaacggaagttacgatccgttctgcatttacttgcaacactaagcatggggtttgtgaa
cattgctacggccgtaacatggctactggtgatgaagttgaagttggtgaagctgttggg
acagttgccgcacagtctatcggtgaacccggtactcagctaaccatgcggaacttccat
accggtggtgttgccggggacgatattacccaagggttgcctcgtgtgcaagaaattgtg
gaatcacggaatcctaaagggcgtgccgaaatctcagaagttactgggacggttgaatta
attgaagaaaatccagcggaacggacgaaggaagttacggttaagggtgaaactgatacc
cggacttacacgttgccgttaacagcacggatggcggttagtgaaggcgactttattcac
cgtggtgctgcgttgaacattgggtcgatcgatcctaagcaattgattcaagtacgtgat
gtcttatcaactgaaaactacttgctccgtgaagttcaaaaggtttatcggatgcaaggg
gttgaaattggcgataagcacgttgaaatcatgattcggcaaatgttacggaaggttcgg
gtcatggatccgggcgataccgacgtcttgcctgggacgttaatggatattgcagacttc
aaggacgagaactacaagaccttgattgctggtggtattcctgcaacgtcacggccagtc
attcttgggattactaaagccgctcttgaaacgaatagtttcttgtcagctgcttcattc
caggaaacgacacgggtcttaactgatgctgctattcgtggtaagaacgatccactgatc
gggcttaaggaaaatgttatcattggtaagatcattcctgctgggactggtatgccggtt
taccgtcatatcaaaccaaaggaagttggcaacgtggctgatggggtttactcaatcagc
gaccttgaaaaacaaatgcaagaacaagatgctagcaagtaa
DBGET
integrated database retrieval system
