Lactiplantibacillus plantarum B21: SH83_09795
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Entry
SH83_09795 CDS
T03680
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
lpb
Lactiplantibacillus plantarum B21
Brite
KEGG Orthology (KO) [BR:
lpb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpb03019
]
SH83_09795
03009 Ribosome biogenesis [BR:
lpb03009
]
SH83_09795
Enzymes [BR:
lpb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SH83_09795
Messenger RNA biogenesis [BR:
lpb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SH83_09795
Ribosome biogenesis [BR:
lpb03009
]
Prokaryotic type
rRNA helicases
SH83_09795
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
ApbA
Microtub_bd
Motif
Other DBs
NCBI-ProteinID:
AJO74600
UniProt:
A0A162EYM1
LinkDB
All DBs
Position
complement(2081049..2082392)
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AA seq
447 aa
AA seq
DB search
MTASFEDFKLQPFLMQALTDINFRKPTAVQEKLIPVIAAGRSVIGQSATGSGKTHTFLLP
MINQLNADERYVQAVITTPSRELAYQIQTAAKQLIQHSPKAIHIGLYVGGTDKQEQIEKL
NRHQPQLIIGTPGRILDLMRSQALDVHRATQLVVDEADMTLDLGFLNVVDQIAGRMPADL
QMLVFSATMPQKLTPFLRKYMNNPVMEEIPVESVISPTIDNWLISTKSHDKNSIIYRLLT
IGEPYLVLVFANTKERVQELTHYLRQQGLTVAMIHGDIQPRERKRVMRDVQQLKYQFVVA
TDLAARGIDIEGVSHVINDDIPNDLEFFIHRVGRTGRNGMAGTAITLYSPGEEAKVSAVE
AMGIKFKPKAIRDGEIVDSYDRNRRAKRGPKQEKLDPTLIGYVKKSKKKIKPGYKRRIRK
KISDKARMDRRIEQRAAARKERKDRKS
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaagttttgaagattttaaattgcagccgttcttgatgcaggcactgactgac
atcaatttccgcaaaccgactgcggtacaggaaaagttgattccagtgattgctgctggc
cgcagcgtcatcggtcagtcagcaactgggagtggtaagacgcatacgtttttactgcca
atgatcaatcaactgaatgctgatgaacgttacgtgcaggcagttatcacaacgcccagc
cgtgaattagcttatcagattcagactgctgctaaacagttgatccaacacagtccgaaa
gccattcacattggactctatgtcggtgggactgataagcaggaacagattgaaaagcta
aatcggcaccaaccacagttgattattgggaccccaggacggattctggacttaatgcgc
tcccaggcactcgatgtgcatcgtgcgactcagctagtagttgatgaagccgatatgacg
ctagacttgggctttttgaacgtggttgaccagattgctggccgaatgcctgctgattta
caaatgttggtgttctcagccacgatgccacaaaaattaacgccatttttacgcaagtac
atgaacaatccagttatggaagaaattccagtagaatctgtgattagtccgactattgat
aactggctgatttccaccaagagtcacgataaaaacagtattatttatcgcttgctgacg
attggtgaaccgtatctcgtgttggtttttgctaacacgaaggaacgagttcaagagttg
acccattatttgcgccaacaaggtttaacggtcgcaatgatccatggagatattcaacca
cgtgaacgaaagcgggttatgcgcgacgtacaacaattgaagtatcaatttgttgttgcc
actgatctagctgcccgtgggattgatattgaaggtgtttcacacgtcatcaatgatgat
attccgaatgacttagaattcttcattcaccgtgttggccggaccggccggaatggaatg
gcggggactgcgattacgttatatagcccaggcgaagaagccaaggtcagtgcagttgaa
gcaatggggatcaagttcaaaccgaaggcgattcgtgatggtgagattgtggattcatat
gaccgtaatcgtcgggctaaacgggggccaaaacaggaaaaactggacccaaccttgatt
ggttacgtcaaaaagtccaagaaaaagatcaagccaggttacaaacgccgcattcgtaaa
aagatcagcgataaggcgcggatggaccgccgcatcgaacaacgagcggctgcccgcaag
gaacgcaaggatcgtaagtcttaa
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