Legionella pneumophila Corby: LPC_3021
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Entry
LPC_3021 CDS
T00532
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lpc
Legionella pneumophila Corby
Pathway
lpc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lpc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LPC_3021 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpc03021
]
LPC_3021 (rpoB)
03400 DNA repair and recombination proteins [BR:
lpc03400
]
LPC_3021 (rpoB)
Enzymes [BR:
lpc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LPC_3021 (rpoB)
Transcription machinery [BR:
lpc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LPC_3021 (rpoB)
DNA repair and recombination proteins [BR:
lpc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LPC_3021 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
DUF6497
Motif
Other DBs
NCBI-ProteinID:
ABQ56921
UniProt:
A5IHS1
LinkDB
All DBs
Position
424064..428170
Genome browser
AA seq
1368 aa
AA seq
DB search
MAVAEAKPQYSHAEKKRFRKSFGKQTDIMPIPNLLEIQLKSYRDFLQTDTKLSEQLNTGL
HAAFSSVFPIESFSGNARLEYVGYKLGEPAFDVRECKLRGLTYSAPLRVKIRLVVLDKDA
SDDPKPIKDIREQDVFMGEIPLMTDVGTFVVNGTERVVVSQLHRSPGVIFEHDKGKTHSS
GKLLYSARIIPYRGSWLDFEFDPKDCVYVRIDRRRKLPVTILLRALGYEAEDILSEFFET
TRCHLKNGEYHIDLIPQRLRGEIASFDIHVPETGELIVEQGRRITARHIKQMEKSQMQDL
VVPRDYLIGKTLAKNIIDTSTGEFLAQANDEITEELLDAMANHGILQIDMIYTNDLDHGS
YISDTLKIDPTGSQLEALVEIYRMMRPGEPPTKEAAEALFKNLFFVEERYDLSAVGRMKF
NRRVGIKSDEGPGTLTKEDILSVIKTLIDIRNGIGMVDDIDHLGNRRVRSVGEMTENQFR
VGLVRVERAVKERLSLVESENLMPQDLINAKPVSAAIKEFFGSSQLSQFMDQVNPLSGVT
HKRRVSALGPGGLTRERAGFEVRDVHTTHYGRVCPIETPEGPNIGLINSLSVYARTNEYG
FIETPCRKVVNGRVTDEVEYLSAIEEVDQYIAQSNVELDAQGNILADLVPCRHQNEFSLT
TPDKINYMDVSPKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRSEKPLVGTGME
RIVASDSGVSVVAKRGGVIDLVDASRIVVRVNDDETTAGETGVDIYNLTKYFRSNQDTCI
NQRPIVSTGDRIQRGDVLADGPCTDMGELALGQNLLVAFMPWNGYNFEDSILISERIVHD
DRFTTIHIEELTCIARDTKLGTEEITADIPNVGESALSNLDESGVVYIGAEVKAGDILVG
KVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPSGMNGTVIDVQVFTRDGLEKDARA
KSIEEEHLARVRKDLIDERRIREEDIYHRVSHLLLDKVATGGPGSLKPGSKITQDYLDKV
EREKWFDIRIEDDAVSQQLEQLSKQLELLTKEMEKRFNDSRKKIIQGDDLAPGVLKIVKV
YLAVKRRIQPGDKMAGRHGNKGVISIVVPVEDMPHMEDGTAVDIVLNPLGVPSRMNIGQV
LETHLGLAAKGLGRKIAQMLDERQTPEAIKAYLEKIYNHDGVQRVNLKCLNDDELMTLAD
NLRAGVPMATPVFDGATEQEIKSMLQLADLPADGKTVLIDGRTGNKFDNPVTVGYMYMLK
LNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK
SDDVGGRTKIYKNIVDGDHRMDPGMPESFNVLLKEIRALGIDIELEHD
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atggcagttgcagaagctaaacctcaatattcgcatgctgagaaaaaacgatttcgcaaa
agctttggtaagcagacagatataatgccaataccgaatctgcttgaaattcaacttaaa
tcctacagggattttcttcaaactgatactaaattaagcgaacaactgaatacgggattg
catgctgcattttcttctgtatttcctatcgaaagcttttctggtaatgcaagacttgaa
tacgtcggatacaagcttggagagcctgcatttgatgttcgcgaatgcaaactaagaggg
ctgacttactcagctcctctaagagtcaagatcagactcgttgtgcttgataaagacgca
agcgatgatcctaaacctataaaggatattagagagcaagatgtttttatgggggaaatt
cctctaatgaccgacgttggtacgtttgtggtcaatggaactgaacgtgttgttgtatca
caattacatcgttcgcctggggttatatttgaacatgacaagggaaaaactcactcttca
ggtaaattgctctattctgcacgaataataccttatcgtggttcatggttggattttgaa
ttcgatcctaaagattgcgtttatgtacgtattgacagacgtcgcaaactgccagtgacc
attttgctcagagcattgggctacgaagcagaagatatcttaagcgaattttttgaaaca
actcgttgtcatttaaaaaatggcgaataccacatcgatttaattccacagcgtttgcgt
ggtgaaatcgcttcattcgatattcatgttcctgagacaggagagcttatcgtagaacaa
ggtcgtcgaattaccgcaagacatataaagcaaatggaaaaaagccaaatgcaggatctt
gtggtgccaagagactatttaattggaaaaacattagcaaaaaatattattgatacctca
accggtgaatttctggctcaagcgaatgatgagataacggaagagcttttagatgctatg
gctaaccatggtattttacaaattgatatgatctatactaatgatttggatcatggttct
tacatatcggatacattaaaaattgatcccacaggatcacaactagaagcactcgttgaa
atttaccgcatgatgcgccctggagagcctcctacaaaagaagctgctgaggcactgttc
aaaaatctattctttgttgaagaaagatatgatctatctgctgttggcagaatgaaattt
aatcgtcgcgtaggaattaagagtgacgaaggcccaggcactttaacgaaagaagatatt
ttatctgtcattaaaacactgatagatattcgaaacggtatagggatggttgatgatatc
gatcacctaggaaatcgtagggtaagaagtgttggcgaaatgaccgaaaatcagtttaga
gtaggtcttgttcgtgttgaacgtgctgttaaagagcgtttaagtttggttgaatctgaa
aatctgatgccacaggacttaattaacgcaaaaccagtatccgccgcaattaaagagttt
tttggatccagtcagttatcacagtttatggatcaagtgaatccattatctggtgttacg
cataaaagacgtgtatcggctcttgggccaggtggtttaacacgtgagagggctggattt
gaggtccgtgacgtacatacaactcactatggtcgtgtgtgtccaattgaaacgcctgaa
ggaccaaatattggtctaatcaattcactgtcagtttatgcaagaactaacgaatatgga
tttattgaaactccttgtcgaaaggtcgttaatgggcgtgtgacagatgaagttgaatac
ctatcggctattgaggaagttgatcaatacattgcacaatccaatgttgagttagacgca
caaggaaatattcttgctgacctagttccttgcagacatcaaaatgaattttcactgact
accccggataaaattaactacatggatgtctcgcccaagcaaattgtgtcagttgctgct
tcattgattccgtttttagagcacgatgacgcaaacagagcattaatgggttcaaacatg
caacgacaggctgtaccaaccttgcgttcagaaaagcccttggttgggaccggtatggaa
agaattgttgcatctgattcaggggtctcagttgttgcgaagagaggtggagttattgat
ctggttgatgcttctcgtattgttgttcgagtgaatgacgacgaaacaacagcaggggaa
acaggggtagatatttataacttaaccaagtatttccgttctaaccaggatacttgtatc
aatcaaagacctatagtatcaacaggtgatcgaattcaacgaggcgatgtcctggctgat
ggtccatgtacagatatgggtgaattggctcttggacagaatctactggtagcgtttatg
ccttggaatggttataactttgaggattccattcttatatctgaacgaatcgttcatgac
gacagattcactactattcacatcgaagagttaacatgtatagctcgagataccaaatta
ggtacagaagaaattacagcagatattcccaatgtaggcgagtctgcactctccaatttg
gatgaatctggagttgtttacatcggtgcagaagtaaaagcaggcgatattcttgtgggt
aaagtaactcctaaaggcgaaacccaactaactccagaagaaaaactgttaagagctatc
tttggtgaaaaagcttcagatgttaaagattcatctttgagagttccatcaggcatgaat
ggaacagtgatcgatgtacaagtcttcactcgtgatggacttgaaaaggatgcccgcgct
aaaagcattgaagaagagcatctagcacgagttcgcaaggatttaatagacgaacgacgt
attcgtgaagaagacatctatcatagagtttctcatttgttgttggataaggtggcaaca
ggcggtcctggaagcttaaagccaggatctaaaatcacccaggattacttagataaggtt
gaaagagaaaagtggtttgatattcgtatagaagatgacgcagttagtcagcaacttgaa
caattatccaagcagctggaacttttaacaaaagaaatggaaaagcgctttaacgacagt
agaaagaaaattatccagggagatgatttagctcctggtgtattaaaaattgttaaagtg
tatttggctgttaaaagaagaattcagcctggagacaaaatggcaggtcgtcatggaaac
aagggtgtgatctccattgttgttccagttgaagatatgccacatatggaagatggaacg
gctgtagatatcgttcttaatccattgggcgtaccatcgcgaatgaatatcggtcaggtt
cttgaaacgcatttaggactagctgccaaaggattaggaagaaagattgcacagatgctt
gatgaaaggcaaacacctgaagcaataaaagcataccttgagaaaatttataatcatgac
ggagtgcagcgtgttaatttgaaatgcctcaatgatgatgaattgatgacactggctgat
aacctgagagctggtgtgccgatggcaactcccgtctttgatggtgctactgagcaagaa
atcaaaagtatgttgcagttagcagatttaccagcagatggtaaaactgtgttgatagat
ggccgaacaggtaataaatttgataatccggttactgtaggctacatgtatatgttgaag
ttaaaccatttggttgatgataagatgcatgctcgctcaactggatcatacagtttggtc
actcaacaaccacttggcggtaaagcacagtttggtggtcagcgttttggtgagatggaa
gtatgggcattagaagcatatggtgcagcatacactttacaagaaatgttaaccgtaaaa
tcagatgacgtcggaggtcgaacaaagatctataaaaatatagtcgatggagatcatcgt
atggacccaggaatgcctgaatccttcaatgtattattgaaggaaattagagcactggga
attgatatcgagttggagcatgactaa
DBGET
integrated database retrieval system
