Secundilactobacillus paracollinoides: AYR62_03475
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Entry
AYR62_03475 CDS
T04675
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lpd
Secundilactobacillus paracollinoides
Pathway
lpd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AYR62_03475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpd03019
]
AYR62_03475
03016 Transfer RNA biogenesis [BR:
lpd03016
]
AYR62_03475
Enzymes [BR:
lpd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AYR62_03475
Messenger RNA biogenesis [BR:
lpd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AYR62_03475
Transfer RNA biogenesis [BR:
lpd03016
]
Prokaryotic type
tRNA degradation factors
AYR62_03475
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
RNase_II_C_S1
Phage_term_smal
Motif
Other DBs
NCBI-ProteinID:
ANZ63255
LinkDB
All DBs
Position
823569..825989
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AA seq
806 aa
AA seq
DB search
MEDNNLKQQIEDLLRANPTKKFRVEDISDALHYHGSAAFKLIVQELARLEREKVAAVTGE
SEFQLDPKARVLTGIFHSNDKGFGFVAYDDDLPDAYIAPDNTMSALNGDEVEMEIVRPAD
PRSDRGPEGKVTGIATHNYTQVVGEFMQTDDDKGYYGQVRLTDKKLKRYSFYVVGTGLKP
TPGEVVTAEITGFPSSEHPLAMVGIAKKIIGSVDDPGIDILSIVYAHDIPSEFPEDVLEE
ADAIPDHVTEEEMKGREDVTDQNLVTIDGESSKDLDDAVTVWKMDNGNYHLGVHIADVSH
YVKEGTLLDQEAYKRGTSVYLTDRVIPMLPRRLSNGICSLNEGVLRLCMSCEMEIDPEGN
VVNHRIHPSVMKSKARMTYTNVNKIIEAHDEATRDRYGELTPMFDEMAELHKILYKSRKR
RGAIDFDDTEAEIIVDDKGHAIDIKLRVRGVAERMIESFMLAANETVAEHYNKAKAPFIY
RVHETPDGERVKSFFEFLTAFGINVKGDPDHLRPKMLQNVLKGVAGKPEEAVVSVMMLRS
LKQAKYTDQSLGHFGLAAKYYTHFTSPIRRYPDTMVHRLIHFYEKNGINAESKARYANLL
EEVGVHSSEMERRAIDAERDTDAMKKAEYMADHIGEEFDATVSSVMKFGMFIELPNTVEG
LIHISRMQDDYYEYVEKFLALVGRTTKRTYRIGQPVRVKVVNVDKEQSQIDFDLVNPEAA
PTSDLLPKRESRSRGGRSGGSFGHGNNRNSNNNNRNHGNGNRGSNTRGGNNHGGNRNGNG
GNNGNQNHSNGGNHSNNNRNQPRKHN
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
ttggaagataacaacttaaagcaacaaatcgaggatctgctccgcgcaaatcctaccaaa
aaatttcgcgttgaagatatttcagacgcactgcactatcacggctcagccgcattcaaa
ctgatcgtgcaggaacttgcacgccttgaacgtgaaaaggtggctgctgtcaccggtgaa
tcagaatttcaattagacccgaaggcccgtgttttgaccgggatcttccatagtaacgat
aagggctttggtttcgtggcctacgacgatgatctgccagatgcctacattgcgccagat
aacacgatgtcagcactgaacggcgatgaagttgaaatggaaatcgttcggccagctgat
ccacgctctgaccgcggtcctgaaggaaaagtcacggggattgcgacccataactacact
caagtcgttggtgaatttatgcagaccgatgatgataagggctactatggtcaagtccgg
ttaaccgacaaaaagttgaagcggtacagcttttacgttgttgggactgggttaaaacca
acgccaggtgaagttgtgacggcggaaatcacgggatttccatcgtcagaacacccctta
gcgatggtcggcattgctaaaaaaatcattgggagtgttgatgatcccggcattgatatt
ttgtcgatcgtttatgcacacgatattccatctgaattcccagaagatgttttggaagaa
gccgatgctattccagatcacgtgactgaagaagaaatgaagggtcgcgaagatgtcacc
gaccagaacctggtgacgattgatggcgaatcttcaaaggacttggatgatgccgttacc
gtttggaaaatggataatggcaattaccaccttggggttcacattgccgatgtgtcccac
tacgttaaagagggtaccctgcttgatcaggaagcctataagcgtgggaccagtgtctac
ttaaccgaccgggtgattccaatgttgccacggcggttatcaaacgggatctgttcatta
aacgagggcgtgctgcggctttgcatgtcctgtgaaatggaaattgatccggaaggtaac
gtggtcaaccaccgcattcacccaagcgtgatgaagtcaaaagcacggatgacttacacc
aacgtgaataagatcattgaggcgcacgatgaagctacccgtgaccgatacggcgagttg
accccaatgtttgatgaaatggctgaactgcataagattctttacaagtctcggaagcgt
cgcggtgccattgattttgacgacactgaagctgagatcatcgttgacgacaagggtcac
gccattgacattaaattgcgggttcgtggcgtcgctgaacggatgatcgaatccttcatg
ctggctgccaacgaaaccgttgctgaacactacaacaaggcgaaagcaccatttatttac
cgggtgcacgaaacaccagatggcgaacgggtcaagagtttcttcgaattcttgactgcc
tttggcatcaacgttaagggtgatccagatcacttgcggccaaagatgttgcagaacgtt
ttaaagggtgttgccggtaagccagaagaagccgtcgtttcagtcatgatgctgcggagt
ttgaaacaggctaagtataccgaccaatccctaggtcactttgggttggctgcgaagtac
tatacccatttcacatccccaattcgacgttatccagataccatggtgcaccgtttgatc
cacttctacgaaaagaacggcatcaatgctgaatccaaggcacgctatgctaacttgcta
gaagaggtcggtgtccacagttctgaaatggaacgtcgggcaatcgatgctgaacgtgat
acagatgctatgaagaaagctgaatacatggcagaccacattggcgaagaatttgatgcc
acggttagttctgtcatgaagtttgggatgttcattgaactgccaaacacggttgaaggg
ctgatccacattagccggatgcaggatgactactacgaatacgtcgagaagttcctggcc
ttggttggtcggacaacgaagcggacttaccggatcgggcaacccgttcgtgttaaggtt
gtcaacgtggacaaggaacaaagtcagatcgactttgaccttgtgaacccggaagctgcg
ccaacctctgatctgctgccaaagcgcgaatcacgcagtcgcggtggtcgtagcggcggg
tcattcggtcatgggaataaccgtaatagcaacaacaataatcgcaatcacggtaatggt
aaccgtgggagcaacactcgtggcggcaacaaccacggtggtaaccgcaatgggaatggt
ggcaataacggcaaccaaaaccacagtaatggcggcaaccacagcaacaataatcgtaac
cagccacgaaaacacaactaa
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