Secundilactobacillus paracollinoides: AYR62_05840
Help
Entry
AYR62_05840 CDS
T04675
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
lpd
Secundilactobacillus paracollinoides
Pathway
lpd03030
DNA replication
lpd03430
Mismatch repair
lpd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lpd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AYR62_05840 (dnaE)
03430 Mismatch repair
AYR62_05840 (dnaE)
03440 Homologous recombination
AYR62_05840 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lpd03032
]
AYR62_05840 (dnaE)
03400 DNA repair and recombination proteins [BR:
lpd03400
]
AYR62_05840 (dnaE)
Enzymes [BR:
lpd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AYR62_05840 (dnaE)
DNA replication proteins [BR:
lpd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AYR62_05840 (dnaE)
DNA repair and recombination proteins [BR:
lpd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AYR62_05840 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
HHH_6
PHP
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
ANZ63660
LinkDB
All DBs
Position
1306570..1309944
Genome browser
AA seq
1124 aa
AA seq
DB search
MGFVPLHVISSYSLLQSTIELKTLVTTAVERGYKALALTENNVMYGTVEFYQACQQAGIQ
PIIGLTLTLEGILASDQQFPLIFLAKDLTGYQHLMMLSSLHQRLTGDQTLTLADIKPYMT
HLMVVTPTNGETAYWLNQGNQQAVSDYLTTLKSATDDNSVLLGVSAQQSATYRQLLSKTA
ADLRTPQVALPTVQYLNADDRFVVSVLGAIKDGTTISNLAEAQQKTGQYWLKPAATFDQE
YQEVGLQSAAEMTAQVAAACQVQLKFQHPQLPQFKTPDQTPSKTYLRTQCETGLKQRLAT
NQITDADPYWDRLNHELDVIDRMGFDDYFLIVWDVMQFTKKAGITTGPGRGSAAGSLVAY
SLGITDVDPILYNLLFERFLNEERAQMPDIDLDIPDNRREEVLQYVHDQYGHERVGQIIT
FGTLATKQAIRDVGRVFELRPYELSEWSATIPNLLHISLKEAYKQSQPLQNLVADASLNK
LLFETAEKLEGLPRHYSTHAAGVVLSDQPLTNIVPVQNGSETMLMTQYTKDYVEQVGLLK
MDFLGLRNLSIMAAALGMIQKQYGKPLQISQVNLNDQATLQLFQNGDTNGVFQFESAGIK
NVLRRLKPDSFELIAAVNALYRPGPMENIDHFIKRRFNQEPVTYPDDSLKPILAPTYGIL
MYQEQVMQVASVMGGFTLGQADLLRRAMSKKKKATMDAMQKKFLEGAAAKGYPQAAAEQT
YNYIDRFANYGFNRSHAVAYSKMAFELAYLKVHFPGAFFASLLNSVLNNTAKTKLYLMEA
KRHQVTILPPDINASAAYFRLTKDGIRFGLSSIKGMRRDFLQAILDERQQQGPFKSLHQF
LVRLDKKWLKADLIEGLIYAGAFDQFGNNRAEMIASLPEFLSSVELSGDNLELFEALAPK
IQRQPDLSLSEKLEKENEYLGAYLSGHPVEQYHDLAISRHTVSIGDLAADQQVNLLVYVT
KVRTIRTKRGDQMAFVTGSDLTGEISLTVFPNLYRRVSTWLEKEQVVFVSGKTETNRGGL
QVAANNMTAADQLQPSAQQNSGELPPAPRWFLRLDQEHDTPAATTKLFALLSDHTGDVPV
ILYRLKDDSKRVLAKQYWPVADEQLQHELVLLLGEQNVVFQRKN
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgggctttgtgccgttacacgttatcagcagctacagtctgcttcaaagtacaattgag
ctcaaaacattagtcactacggcggttgaacgcggctacaaggcactagcgctcaccgaa
aacaacgtgatgtatggcaccgttgaattttatcaggcgtgtcagcaggcggggattcag
ccaattatcgggctgacattgactctggaaggcattctggccagtgaccagcagtttccg
ctgatttttttggctaaggatctaacgggttaccagcatctgatgatgttgtcgtcgctg
caccagcgactgacgggtgatcagacgttgaccctggcggatataaaaccctacatgaca
cacttaatggtagtgacacccaccaatggggaaacggcctactggctcaatcagggcaat
cagcaggcggtcagtgactacctgacgacccttaagtcagccacggatgacaatagtgtg
ttgcttggggtgagtgcccaacagtcggctacgtaccgccaattgctcagcaaaacggct
gccgatctgcggacaccgcaagtggcgttgcccacggtgcagtatctgaatgcggacgac
cggtttgtggtgagtgtgttgggagccattaaggatggcacgaccatcagtaatttagcc
gaggcccaacaaaaaacgggtcagtactggttaaaaccagcagcgacgtttgaccaggag
taccaagaagtgggtctacaatcggcggcagaaatgactgcgcaggttgccgctgcttgt
caggtgcaattgaaatttcaacatccgcaactcccacagtttaaaacgccagatcaaaca
ccatctaaaacctatttgcgcacccagtgtgaaacggggttaaaacagcggctggcaacg
aatcagatcacggatgctgatccgtactgggaccgactgaatcacgaacttgacgtgatc
gaccggatgggctttgatgactattttctaattgtttgggatgtcatgcagtttacaaaa
aaggcgggcatcacaactggtcccggccgggggtctgctgcgggctctctggtggcgtat
agtttgggtatcacggatgtggacccgattttgtataatttgttgtttgaacgatttttg
aatgaggaacgggctcagatgccggatatcgatctggatattccggataaccggcgtgag
gaagtgttgcagtatgtccatgaccagtacggccacgaacgggttgggcagatcatcacg
tttgggacgctagcgaccaagcaggcgattcgtgacgtgggtcgggtctttgagttgcgc
ccctatgagctcagtgaatggagcgcgacgattccaaatctcctgcacatttcgttaaag
gaagcgtataaacaatcgcagccgctgcagaatcttgtggcggatgccagtctcaataag
ttgttgtttgaaacagccgaaaagctggaagggctgccgcgacattactccacccacgct
gctggggtcgtcctcagtgaccagccgctgaccaacattgtgccagttcaaaacggctcg
gagaccatgttgatgacgcagtacaccaaagactacgttgaacaggtcgggctactcaaa
atggattttctggggctccggaacctgtcgatcatggctgctgccctgggtatgattcaa
aaacagtacggcaagccgctccagatcagtcaggtcaacctcaatgaccaagcgacctta
cagttatttcaaaatggcgacacgaacggtgttttccaatttgaatctgccgggatcaaa
aatgtgttacgacggttaaaaccagactcctttgagctgattgccgcggtgaacgcgctg
tatcggccagggccaatggaaaatatcgaccactttattaagcggcgtttcaaccaggaa
ccggtcacgtatccggatgactctttgaaaccgatcctagcaccaacctatggcattctt
atgtaccaagaacaggtcatgcaggtggcgtctgttatgggtgggtttacgctggggcaa
gccgatttactgcgacgcgcgatgagtaagaagaaaaaggccaccatggacgcgatgcaa
aagaagttccttgagggtgccgccgcgaaggggtacccccaggcagctgctgaacagacg
tataactatatcgaccgatttgccaactacgggtttaaccgttcccacgcggtcgcttat
agtaagatggcgtttgaactggcttaccttaaggtccatttccccggcgcattctttgcg
tcgctcttaaactcggtcttaaataatacggcgaagactaaactttatttaatggaagca
aagcgccatcaggtgaccattctgccacccgatattaatgccagtgcggcttactttaga
ctgacgaaggatggcattcggtttggactgtcttcaatcaagggcatgcggcgcgatttt
ctgcaagcaatccttgacgaacgtcagcagcagggaccgtttaaatccctgcatcagttc
ctagtgcgcctggataaaaaatggctgaaggcggacctgatcgaaggcttgatctacgcc
ggtgcctttgaccagttcggtaataaccgggcagaaatgattgcgagtctgccggaattt
ttaagcagcgtcgaattaagcggggataacttggagctgttcgaagcactggcaccgaag
atccaacgccagccagatctgtcccttagcgaaaaactcgaaaaagaaaacgagtatctg
ggggcttatttatctggccatccagttgagcagtaccacgacctggcaatatcgcgccac
acagtttcaattggcgacttggctgccgatcaacaggtaaatctgttggtctacgtcacc
aaggtgcgcacgattcgaaccaagcgcggtgaccagatggcctttgtgaccggttctgac
ctgactggcgagatcagtttaactgtttttcccaacctgtaccgccgcgttagtacctgg
ttggaaaaagagcaggtcgtttttgtcagcggtaaaactgagaccaaccgcggcgggctg
caggtggctgccaacaacatgacggcggctgaccagctgcagccgtcagcacagcagaac
agtggtgaattaccgccggcgccacggtggttcttgcgccttgatcaggagcacgacacg
ccagcggccacgaccaagttgtttgcgctgttaagtgaccatactggggacgtgccggtt
attttgtaccggttgaaggacgacagcaaacgcgttttggctaaacaatactggccagtt
gcggatgaacagttgcagcatgagctcgtcttgttattgggtgaacaaaacgtggtgttt
caaagaaaaaactaa
DBGET
integrated database retrieval system
