Secundilactobacillus paracollinoides: AYR62_07800
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Entry
AYR62_07800 CDS
T04675
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
lpd
Secundilactobacillus paracollinoides
Brite
KEGG Orthology (KO) [BR:
lpd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpd03019
]
AYR62_07800
03009 Ribosome biogenesis [BR:
lpd03009
]
AYR62_07800
Enzymes [BR:
lpd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AYR62_07800
Messenger RNA biogenesis [BR:
lpd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AYR62_07800
Ribosome biogenesis [BR:
lpd03009
]
Prokaryotic type
rRNA helicases
AYR62_07800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
ANZ63988
LinkDB
All DBs
Position
complement(1721438..1722799)
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AA seq
453 aa
AA seq
DB search
MSESFKDFGLKPFLNEALTELNFKTPTPVQEKLIPVVKAGKSVVGQSQTGSGKTHAFLLP
IFDKIDPNKHEVQAVITTPSRELAYQIYGDAKQLAKHSEAEIRIGNYVGGTDKKRQIDKL
QREQPEIVIGTPGRVLDLIQSNALDIHTATQFVVDEADMTLDLGFLEQVDKIAGRMPENL
QMMVFSATIPDKLRPFLRKYMDNPVIEEIPVKSVISPTIDNWLLSTKGRSKNELIYKLLT
MGEPYLALVFANTKKRVVEIADFLKSQGLKVAVIHGDLPARERKRVMREVQNLDFQFVVA
TDLAARGIDIEGVSHVINDGIPEDLDYFIHRVGRTGRKGMQGTAITLYSPDDEDQIEALE
DLGIVFKPKELKNGEIVDSFDRNRRKKRGNKPVKISGSMAGAIHKAKKKVKPGYKRRIKK
AISREQQMEHRIEIRQKQRQAKKRKKASSERYK
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaatcctttaaggacttcggtctgaaaccatttttaaacgaagccctaacggaa
ttgaattttaaaaccccaacgccggttcaagaaaaattgattccggtcgttaaagctggc
aaaagtgttgtcggccagtctcaaacagggagtgggaagacccacgcctttttattgcct
atttttgataagatcgatcctaacaagcacgaagttcaagctgtgatcaccacgccaagc
cgtgagttagcctaccagatctatggtgacgcgaagcagttggccaagcatagtgaggct
gagattcgcatcggtaactacgtgggtggcacggataagaagcgtcagatcgataagctg
caacgtgaacagcctgagatcgtcatcgggacacccggtcgtgttttggatctgatccaa
tcaaacgctttagacattcacaccgcaacgcaatttgttgtcgacgaagctgatatgacc
ctggacctcgggttcttggaacaggtcgataagattgctgggcggatgcctgagaatctg
cagatgatggtcttttcggcaacgattcctgacaagttgcggccatttttacgcaagtac
atggacaacccagtgatcgaagagatcccagtaaaatcagtgattagtccaaccattgat
aactggctgttatcaaccaagggccggtcaaagaacgagctgatctacaagcttttgacg
atgggtgaaccatacttagcgttggtctttgcgaacactaaaaaacgagtcgttgaaatt
gccgacttcttgaagagtcagggccttaaagtggctgtgattcatggtgatttgccagct
cgggaacggaaacgtgtcatgcgcgaggttcagaacctggacttccaattcgtggttgcg
acagacttagcagctcgaggcattgatattgaaggggtttcccacgtgatcaacgacggg
attcctgaagatctggattactttattcaccgtgtcggccggactggtcgtaagggcatg
cagggaacagcaattacgctgtactcaccagatgatgaagaccagattgaagcattagag
gatttaggcattgtctttaagcctaaggaactcaaaaatggcgaaatcgtggattccttc
gaccgtaatcggcgaaagaagcgcgggaataagccggttaaaatctccggcagcatggct
ggtgccattcataaggctaagaaaaaggtcaaaccaggctataagcggcgcattaagaaa
gccatcagccgtgaacagcaaatggaacaccgtattgaaattcggcaaaaacagcgccag
gctaagaagcgaaagaaagcttcgtcggagcgttataagtag
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