Secundilactobacillus paracollinoides: AYR62_09965
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Entry
AYR62_09965 CDS
T04675
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lpd
Secundilactobacillus paracollinoides
Pathway
lpd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AYR62_09965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpd03019
]
AYR62_09965
03400 DNA repair and recombination proteins [BR:
lpd03400
]
AYR62_09965
Enzymes [BR:
lpd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AYR62_09965
Messenger RNA biogenesis [BR:
lpd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AYR62_09965
DNA repair and recombination proteins [BR:
lpd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AYR62_09965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
ANZ64369
LinkDB
All DBs
Position
complement(2207887..2209704)
Genome browser
AA seq
605 aa
AA seq
DB search
MTPQEILKQQFGYDTFRPGQGDVIDHIMNHENVLAIMPTGGGKSLCYQIPALLQDGLTLV
VSPLISLMKDQVDALNENGIPATFINSSLTYGEINDRFDQAQDGRIKLLYVSPERLDSGY
FDRLAELPVELVAIDEAHCISQWGHDFRPSYLNLTATIQQLPSNPTIVALTATATPKVAK
DIMDRLQLDAEVKTGFARPNLSFKVVKDQDIDAFLIDYLKINADQSGIVYASTRKEVERL
TKLLQHHKVAATMYHGGLTKNQRRENQDDFLYDRTPVMVATNAFGMGIDKSNVRFVIHAQ
VPGSLESYYQEAGRAGRDGLPSEAILLFKLADVQIQHFLIDQSERDEQNKQREYEKLQAM
TQYANTPECLQKYILGYFGETCDDCGQCSNCLDTRESQDITVDTQKVLSCVKRMNERFGK
SLVAQVLAGSSNQRIKQFHFQSLSTYGLMKNRKQKAIADLIDFLTASGYLAAEGGQYPVL
KLTPAGVDVLKGETQVFRKEAVKVDHTLPVNSELFEKLRVLRREFAEKQGVPPFVIFSDK
TLRDMCAQMPQTLDDMLNVKGIGANKLEKYGDEFLAVVRAEGDASDVEDAEETAGVAASN
ADDGE
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgacgccgcaggaaatattaaaacaacagtttggttatgacacgtttcgaccggggcag
ggagacgtgatcgaccatattatgaaccacgagaacgtcctggcgattatgccgacaggt
ggcgggaaatcgctgtgttaccagattccagcattgctgcaggatggactcaccctggtg
gtctcaccgctgatctcgctaatgaaggaccaggtggatgcactcaatgaaaacggcatc
ccggcgacgtttattaacagctcgctgacgtacggagaaatcaatgaccgttttgaccaa
gcgcaggatggccgaataaagctgctctatgtgtcgccggaacggctcgattcaggttat
tttgaccggttggcagaattaccagttgaactggtcgccattgatgaggcccactgtatt
tcacagtggggacacgattttcgcccaagttatctgaacttgacggcgacgattcaacaa
ctgccatccaacccaactatcgtggctttgaccgccacggccacgccgaaggtcgccaaa
gatatcatggaccggctacagttggatgcggaggtcaaaacggggtttgcgcgtcccaat
ttgtcgtttaaagtggttaaagaccaagacattgacgcgtttttgatcgattatttaaaa
atcaatgctgaccaatctggcatcgtttacgcctcaacgcgtaaggaagttgaacgcctg
acaaagttgctgcaacatcacaaggtggccgcaaccatgtaccacggcggtctgaccaag
aaccagcggcgtgaaaaccaagatgattttctgtacgatcgtacgccggtgatggtggcc
acgaacgcctttgggatggggattgacaagagtaacgtccggtttgtgatccacgctcag
gtgccgggtagtctggaatcgtattaccaagaagctggccgtgctggtcgggatggatta
cctagtgaagcaatcctattgttcaaactggctgacgttcagattcaacatttcctgatc
gaccaatctgagcgtgatgagcagaataaacagcgtgagtacgaaaaacttcaggcgatg
acccagtatgccaacacgccggaatgtttgcagaaatacattttgggctactttggcgaa
acctgcgatgattgcgggcagtgcagcaactgtctggatacgcgtgaaagtcaggacatt
accgtggatacacaaaaggtgctgtcgtgtgtgaaacggatgaatgaacgatttggtaaa
agtctggtggctcaggtgcttgctgggtcgtctaaccagcgtatcaagcaatttcatttt
cagagtttatccacttatggtctgatgaagaatcgtaaacaaaaggccattgcggatcta
atcgattttttgacggcttccggctacctcgcagcggagggcgggcagtatcccgttttg
aaactgacccccgctggcgttgacgtgttgaagggtgagacccaggtctttcgcaaggaa
gctgttaaggtcgaccacaccttgccagttaacagcgagctgtttgaaaagttgcgtgtt
cttagacgtgaatttgctgaaaaacaaggggtgccaccgtttgttattttctcggataaa
acgttgcgtgatatgtgtgcgcagatgccgcagacccttgatgatatgctgaacgttaag
gggatcggcgctaataagctggagaagtatggcgatgagttcttggctgttgtgcgggct
gagggggacgcttctgacgttgaagatgctgaagagaccgcaggagttgcggcttctaat
gctgatgatggtgaataa
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