Legionella pneumophila subsp. pneumophila ATCC 43290 (serogroup 12): lp12_0254
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Entry
lp12_0254 CDS
T01726
Name
(GenBank) ATP-dependent RNA helicase, DEAD box family
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lpe
Legionella pneumophila subsp. pneumophila ATCC 43290 (serogroup 12)
Pathway
lpe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
lp12_0254
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpe03019
]
lp12_0254
Enzymes [BR:
lpe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
lp12_0254
Messenger RNA biogenesis [BR:
lpe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
lp12_0254
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
UTP25_NTPase-like
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEW50541
LinkDB
All DBs
Position
complement(300938..302200)
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AA seq
420 aa
AA seq
DB search
MSIRKTMSFKQLALIEPLNRAVSELGYTTPTSIQLKAIPLILNGHDLLGSAQTGTGKTAS
FVLPILQKASQQTQTSPNRVKVLILTPTRELAIQVHESIIQYGKYLTLRSAVIYGGVKSH
NQIKQLDSGLEILVATPGRLLDLYQQRAVKFDEIDTLVLDEADRMLDMGFIHDIKKIIKL
LPLKRQNLLFSATFTPEVRALARNILNKAVEIDIAPRNTAVKTIKQTVYSVDRNHKLALL
SHLLHKNNWGQTLVFSRTKHGANKLVKQLAESQIYSVAIHGNKSQAQRIKALADFKSGKV
QTLIATDIAARGIDIEKLACVVNFDLPHVPEDYVHRIGRTGRAGASGLAVSLVSTEEIKL
LLSIEKLINQKLERIKIKDFEFLHNFSDFVSAKIQKFAPPKAGYKGNISRKSRTAFNKSA
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atatcaataaggaaaacaatgagttttaaacaattagcgctgattgagccgctaaacagg
gcggttagtgagttaggctacactacccctaccagtattcaattaaaagccatcccgctc
attttaaatgggcatgatttacttggttccgctcaaacaggaacaggaaaaacagcaagc
tttgtattgcctatcttgcaaaaagccagtcagcaaactcaaaccagccctaatcgagtt
aaagtactgattttaacgcctacacgtgaattagccatccaggtccacgagagcataatc
caatatggcaaatacctaacactgcgctcagctgtgatttacggaggagtaaaaagccac
aaccaaattaaacaattagactcaggccttgagatactggttgcaacaccgggaagatta
ttggatttatatcagcaacgtgctgttaaatttgatgagattgacaccctggtactcgat
gaggcggatagaatgctggatatggggtttattcatgatataaaaaaaattatcaaatta
ttacctttaaaaaggcagaacctgcttttttcagcaacctttacccctgaagtacgcgct
ttagccagaaatatactgaataaagcggttgaaattgatatcgcaccgagaaataccgcg
gtaaaaaccataaaacaaactgtttattcagtagatagaaaccataagttagcccttctg
agtcatttacttcataagaataactggggacaaactttggttttttctcgaaccaaacat
ggagccaataaactggttaagcaactggccgaatcccaaatatattcggttgctattcat
ggcaacaaatcacaggctcaacgaataaaagccttagctgatttcaagtcaggcaaagta
caaacattaattgcaacagacatcgcagcacgtggcatagacatcgagaaacttgcctgt
gtagtgaattttgacctgcctcatgtgcctgaggactacgttcatcggattggacgaaca
ggacgggcaggcgcctctggattggctgtatccttggtcagcacagaagaaataaagctg
ctgctgtctatagaaaaattaatcaatcaaaaactggagcgcattaaaattaaagatttt
gagtttttgcataacttttcagattttgtctcagccaaaattcaaaaatttgcgccgcca
aaagcaggatataagggcaatatcagcagaaaatccaggacggcttttaataaaagcgcg
taa
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